PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma75g00290.1
Common NameZOSMA_75G00290
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 791aa    MW: 86850.7 Da    PI: 6.1894
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma75g00290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-20101156156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Zosma75g00290.1 101 KKRYHRHTQHQIQEMEAFFKECPHPDDKHRKELSRELGLEPLQVKFWFQNKRTQMK 156
                      688999***********************************************999 PP
2START217.25.7e-682985181206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      e+a +a++el+++a++++p+Wv+s+    e++n+d++ ++f+++ +      ++ea+r+s+vv+m++  lve l+d + qW++ +     +a t
  Zosma75g00290.1 298 EVAVTAMEELIRMAQLRDPLWVLSPdnstEILNQDVYFRTFPRGIGpagmgMKSEASRDSAVVIMNHLHLVEMLMDAN-QWSTVFSwivsRAVT 390
                      58899**************************************999********************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      +ev+s+g      galq+m+ae+q++splvp R+ +f+Ry++ +++g w++vdvS+d+ ++ p  +   +++++pSg+li++++ng+skvtwve
  Zosma75g00290.1 391 VEVLSTGvggnynGALQVMSAEFQVPSPLVPtRENYFIRYCKHHSDGIWAVVDVSLDHLRPDP-MP---KSRRRPSGCLIQEMPNGYSKVTWVE 480
                      **************************************************************9.45...5556********************* PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv++++r++h +++ +v+sg+a+gak+wvatl+rqce+
  Zosma75g00290.1 481 HVEVDDRSVHDIYKAVVNSGIAFGAKRWVATLDRQCER 518
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2279156IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1987158IPR009057Homeodomain-like
PROSITE profilePS5007116.69898158IPR001356Homeobox domain
SMARTSM003899.0E-1999162IPR001356Homeobox domain
PfamPF000468.1E-18101156IPR001356Homeobox domain
CDDcd000862.46E-18101159No hitNo description
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084845.137289521IPR002913START domain
SuperFamilySSF559619.75E-38290520No hitNo description
CDDcd088753.38E-120293517No hitNo description
PfamPF018522.8E-57298518IPR002913START domain
SMARTSM002342.5E-69298518IPR002913START domain
Gene3DG3DSA:3.30.530.207.7E-6402518IPR023393START-like domain
SuperFamilySSF559613.0E-23539776No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MPAGILIPAT HMQSMIGGGR SNGTAGVYGS ASGLTLSSQP DRMDGQQQNE EQNEMNLQFN  60
SQTSVLMRGR NDEIDNKSSS ENNEGGSGDD QDSNSQRPNK KKRYHRHTQH QIQEMEAFFK  120
ECPHPDDKHR KELSRELGLE PLQVKFWFQN KRTQMKTQHE RSENSQLRAE NEKLRIENMR  180
YKEALSNASC PNCGGPATLG EMSYDEHHLR IENVRLREEI DRITGITAKY VGGRPSMVNY  240
PMTSPQMGGR VPSLDLGVGS SSNINNNSGH LGGIQQHNMV SEMFGGDTHE ADKPMMIEVA  300
VTAMEELIRM AQLRDPLWVL SPDNSTEILN QDVYFRTFPR GIGPAGMGMK SEASRDSAVV  360
IMNHLHLVEM LMDANQWSTV FSWIVSRAVT VEVLSTGVGG NYNGALQVMS AEFQVPSPLV  420
PTRENYFIRY CKHHSDGIWA VVDVSLDHLR PDPMPKSRRR PSGCLIQEMP NGYSKVTWVE  480
HVEVDDRSVH DIYKAVVNSG IAFGAKRWVA TLDRQCERLA SVMASNTPSG DIGVITSQEA  540
RKSMLKLAER MVISFCNGVS ASTTHQWTTL SGSSADDVRV MTRKSIDDPG RPPGIVLSAA  600
TSFWIPVPPK RVFEFLRDEN SRSEWDILSN GSVVQEMAHI ANGREQGNCV SLLRVNSANS  660
NQSNMLILQE SCTDSTGAFV IYAPVDIVAM NVVLNGGDPD YVALLPSGFA ILPDGPLPPA  720
QQSGSESSRV GDIGTGGSLL TVAFQILVDS VPTAKLSLSS VATVNSLISC TVERIKAAVT  780
AADNHNDNHR *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657311.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X4
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A0K9NPD70.0A0A0K9NPD7_ZOSMR; Homeobox-leucine zipper protein ROC2
STRINGVIT_12s0059g02310.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]