PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma74g00100.1
Common NameZOSMA_74G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 748aa    MW: 82695.4 Da    PI: 6.693
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma74g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.61.5e-1223897452374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLl+cAeavs ++le+a+++L ++sel++p+g++ qR+aayf eA+ ar+++s  e+y+ ++ ++ +   +++ + a+++f+ ++P++kfsh
  Zosma74g00100.1 389 LTLLLQCAEAVSGDNLEEAKKMLVEISELSTPYGTSAQRVAAYFSEAITARILSSYLEIYSPFRLNRWQ---TQKLAGAFQVFNGICPFIKFSH 479
                      579***************************************************999999888766665...7899999*************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      +taNqaI ea+e+ee+vHiiD+d++qGlQWp L++ LasRp+gpps+++Tg+g     + ++le+tg+rL++fAe+lg+pfef + va+++ +l
  Zosma74g00100.1 480 FTANQAIQEAFEREEKVHIIDLDVMQGLQWPGLFHILASRPGGPPSVKLTGLGT----NMDALEATGKRLSDFAETLGLPFEFFP-VAEKVGNL 568
                      ******************************************************....9**************************.7******* PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++e+L+v+++Ea+aV++ +  h+l+d  +s ++    +L+l+++l Pkvv++veq+++  +++Fl+rf+ea++yysalfdsl a++++es+er+
  Zosma74g00100.1 569 DVERLNVSKKEAVAVHWLH--HSLYDVVGSDTN----TLWLLQRLAPKVVTMVEQDLSQ-TGTFLARFVEAIHYYSALFDSLGASYSEESHERQ 655
                      *****************99..888877777777....********************98.899******************************* PP

             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +vE++ll+rei+nv+a  g +r+ + + + +Wre+l+++GF+  +l  +aa+qa+lll +++ dgy++ +e+g+l lgWkd  L+++SaW+
  Zosma74g00100.1 656 VVEQQLLAREIRNVLAVGGPARTGEVK-FTNWREKLRHSGFRLSSLAGNAATQASLLLGMFPCDGYTLVQENGTLKLGWKDLCLLTASAWK 745
                      *********************998887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.229362725IPR005202Transcription factor GRAS
PfamPF035145.3E-120389745IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MASSSSSFLL HPPLPPPSFY CHDTTAITPD INSTATAIYN TNNNNANHFF YSTNQQPRPE  60
EEIIFSFTRG RKRRMVRKRT ASEIDDEPSP FDRGSHSYHH HVAVPPQSST VFDGDLQGQP  120
NIINPFLNIQ SPSSLYPLPS LHPPPIQPPV CGLSGLPVFS SDGTTMVTQN NHGPVGMPDS  180
SLNENDSAVA ATAWVDRLIR DLIGNSSTDV TVAQLIQSVR EIIQPSNPNL ASVIEYRLRS  240
LSAADSTPPS QLPPIPCGRF HSSTVTATDR PPFPSSFQHY QTPVPTTMVQ QSNNSRVMTA  300
VDHSFTSNEP SPIIQFSNWE ETRLLPVATP QSTPPPPQPP HRQQQPQFQK PICTAKTETT  360
TATTIAIVRS RRAEELRKKK RDEEGLHLLT LLLQCAEAVS GDNLEEAKKM LVEISELSTP  420
YGTSAQRVAA YFSEAITARI LSSYLEIYSP FRLNRWQTQK LAGAFQVFNG ICPFIKFSHF  480
TANQAIQEAF EREEKVHIID LDVMQGLQWP GLFHILASRP GGPPSVKLTG LGTNMDALEA  540
TGKRLSDFAE TLGLPFEFFP VAEKVGNLDV ERLNVSKKEA VAVHWLHHSL YDVVGSDTNT  600
LWLLQRLAPK VVTMVEQDLS QTGTFLARFV EAIHYYSALF DSLGASYSEE SHERQVVEQQ  660
LLAREIRNVL AVGGPARTGE VKFTNWREKL RHSGFRLSSL AGNAATQASL LLGMFPCDGY  720
TLVQENGTLK LGWKDLCLLT ASAWKPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03727463380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368378RSRRAEELRKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278894.10.0PREDICTED: protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A0K9NPH80.0A0A0K9NPH8_ZOSMR; Scarecrow transcription factor family protein
STRINGXP_010278894.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein