PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma70g00740.1
Common NameZOSMA_70G00740
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 281aa    MW: 31271.1 Da    PI: 4.7444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma70g00740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.4e-163279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT +Ed+ll +++  +G g W++ a++ g+ Rt+k+c++rw++yl
  Zosma70g00740.1 32 RGQWTVDEDLLLMNYISVHGEGKWNSLASRAGLMRTGKSCRLRWLNYL 79
                     89********************************************97 PP
2Myb_DNA-binding55.11.7e-1785128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Zosma70g00740.1  85 RGNITPEEQLLILDLHSRWGNR-WSKIAKHLP-GRTDNEIKNYWRT 128
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0672779IPR017930Myb domain
SuperFamilySSF466891.05E-2930126IPR009057Homeodomain-like
SMARTSM007174.2E-113181IPR001005SANT/Myb domain
PfamPF002498.2E-153279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-223386IPR009057Homeodomain-like
CDDcd001678.17E-103579No hitNo description
PROSITE profilePS5129424.80980134IPR017930Myb domain
SMARTSM007171.4E-1584132IPR001005SANT/Myb domain
PfamPF002496.6E-1685128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2487133IPR009057Homeodomain-like
CDDcd001672.84E-1289128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFVIHGGCAS LNSCSSAGSG GEEVELGGEL RRGQWTVDED LLLMNYISVH GEGKWNSLAS  60
RAGLMRTGKS CRLRWLNYLR PDVRRGNITP EEQLLILDLH SRWGNRWSKI AKHLPGRTDN  120
EIKNYWRTRV QKNAKQLNCD VNSLRFKEVI KNIWMPRLVD KIRANSVNTP PVKDYSAVVN  180
GNDNHSCSPC EGSTDVPMDA VWDELLMDVT GIDQQREYSP IGSELWSAPP PISDLTTVWY  240
DGALDSSINE NPVAGGGEGV IDDVSFGEWD GIDDIWALLD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-232613221126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020682028.12e-82transcription factor MYB2-like
SwissprotQ10MB41e-80MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0K9NSV50.0A0A0K9NSV5_ZOSMR; Uncharacterized protein
STRINGTraes_4DL_9023F3504.12e-80(Triticum aestivum)
STRINGGSMUA_Achr9P16640_0012e-80(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-71myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]