PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma70g00500.1

Common Name

ZOSMA_70G00500

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 342aa MW: 39279.9 Da PI: 7.6333

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma70g00500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.5e-55	40	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yL+ k++++ ++ +i++vd +k+ePwdLp k+k +ekewyfFs rd+ky+tg+r+nrat+sgyWk+tgkdke+++ Zosma70g00500.1 40 LPPGFRFHPTDEELVAYYLHTKLSDHGFSP-YAIADVDFNKSEPWDLPDKAKIGEKEWYFFSLRDRKYPTGHRTNRATNSGYWKTTGKDKEIFH 132 79***********************998.67***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLvfykgrap+gekt+W+mheyr Zosma70g00500.1 133 -GETQVGMKKTLVFYKGRAPRGEKTNWIMHEYRH 165 .999**************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-62	37	186	IPR003441	NAC domain
PROSITE profile	PS51005	57.19	40	186	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	41	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEDVSHSRRC MQTSSIKREA KEENSIQSLI MEIDNLNQNL PPGFRFHPTD EELVAYYLHT 60 KLSDHGFSPY AIADVDFNKS EPWDLPDKAK IGEKEWYFFS LRDRKYPTGH RTNRATNSGY 120 WKTTGKDKEI FHGETQVGMK KTLVFYKGRA PRGEKTNWIM HEYRHQTKNV YRPPEEEWVV 180 FRIFRKPDSC KKLLLLKSSA LASASSQSYQ APTIDSPCRI NYTTKAGDFI TAVHDGEIPV 240 LYNKKPADVT PPTSFNQFAS TSCNNIISSS RMDMRKNWTS VAEDAVADDQ HQQQYYDSNW 300 PGSLLHESNL LSNSDIFSGE MRFGFYPQGD AFVDNTGRFC K*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEDVSHSRRC MQTSSIKREA KEENSIQSLI MEIDNLNQNL PPGFRFHPTD EELVAYYLHT  60
KLSDHGFSPY AIADVDFNKS EPWDLPDKAK IGEKEWYFFS LRDRKYPTGH RTNRATNSGY  120
WKTTGKDKEI FHGETQVGMK KTLVFYKGRA PRGEKTNWIM HEYRHQTKNV YRPPEEEWVV  180
FRIFRKPDSC KKLLLLKSSA LASASSQSYQ APTIDSPCRI NYTTKAGDFI TAVHDGEIPV  240
LYNKKPADVT PPTSFNQFAS TSCNNIISSS RMDMRKNWTS VAEDAVADDQ HQQQYYDSNW  300
PGSLLHESNL LSNSDIFSGE MRFGFYPQGD AFVDNTGRFC K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	30	192	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	30	192	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	30	192	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	30	192	6	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	30	192	9	174	NAC domain-containing protein 19
3swm_B	1e-54	30	192	9	174	NAC domain-containing protein 19
3swm_C	1e-54	30	192	9	174	NAC domain-containing protein 19
3swm_D	1e-54	30	192	9	174	NAC domain-containing protein 19
3swp_A	1e-54	30	192	9	174	NAC domain-containing protein 19
3swp_B	1e-54	30	192	9	174	NAC domain-containing protein 19
3swp_C	1e-54	30	192	9	174	NAC domain-containing protein 19
3swp_D	1e-54	30	192	9	174	NAC domain-containing protein 19
4dul_A	1e-54	30	192	6	171	NAC domain-containing protein 19
4dul_B	1e-54	30	192	6	171	NAC domain-containing protein 19
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9FLR3	4e-75	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A0K9NQJ8	0.0	A0A0K9NQJ8_ZOSMR; NAC domain-containing protein 8
STRING	XP_008807109.1	2e-83	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-77	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Zosma70g00500.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]