PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g01640.1
Common NameZOSMA_6G01640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 311aa    MW: 34753.9 Da    PI: 10.71
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g01640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.34e-3998158262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e+alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  Zosma6g01640.1  98 PEQALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 158
                     7899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3582156IPR003851Zinc finger, Dof-type
PfamPF027011.2E-32100156IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.311102156IPR003851Zinc finger, Dof-type
PROSITE patternPS013610104140IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVYASVPPSY LDPPPNNWNQ QYQQQQQQHH QQQQQQNQQH QNQHQRQQVG GNGASGAMDV  60
HQSLPPMATR VESESMGGGS VRPGSMADRA RHAKVPQPEQ ALKCPRCDST NTKFCYFNNY  120
SLTQPRHFCK TCRRYWTRGG ALRNVPVGGG FRRNKRSKTN TGSNKVASTS SSAIHINNTH  180
IKPSSNSSMS MGIATISSTV ITPAPLQLPI FMDYGATNIG LNNNHYGGML PTINNHHQHA  240
QAVVDHYQTP SSGSIMNGMD QWRLQQLQQF PFFAGLTNRL IPPPILHSEC THLTWKERHR  300
RRRMGGSKPT *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416134.12e-64PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLA0A0K9NR470.0A0A0K9NR47_ZOSMR; Dof zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-51OBF-binding protein 3