PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma6g01140.1

Common Name

ZOSMA_6G01140

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

GRAS

Protein Properties

Length: 456aa MW: 51240.8 Da PI: 6.2285

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma6g01140.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	379.3	4.7e-116	71	454	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lLl+cA+ ++++d+++a++lL+ +s++ s + + R+a+ f+ AL+ rl++ +l+ +l+p +++ n ++ + + +++++P+l+f+ Zosma6g01140.1 71 RLLLNCANLIHQSDFTAARRLLSVVSTNTSAQPpelSGADRVAQQFASALSIRLNH--LSLSFSLQPPPSQ-PNPDDLQSCYLSLNKITPFLRFC 162 79***********************95544322489*************9..3444444444433.236666777778******* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...... 181 hltaNqaIleav++ + +Hi+Dfd ++G+QWp+L++a+a+R+ ++ppslRiTg g + + l++tgerL+ fA++lg++f+f++l Zosma6g01140.1 163 HLTANQAILEAVDRRQPLHILDFDTMHGVQWPPLMHAIAERAdpNQPPSLRITGTGT----DLDILRRTGERLKTFADTLGLRFQFHPLllippn 253 *************************************98889*******....9***************************** PP GRAS 182 .........vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 a+ ++++++++++++pgE+laVn+vl lh+ll+++++ ++ +++L+++k+++P vv+++e+ea+hns++Fl+rf+eale+y+a+ Zosma6g01140.1 254 rigtgsstlSASCTQNISPSTFQLHPGETLAVNCVLFLHTLLKDNGDDDE-VRSFLQAIKTMNPAVVTIAEREASHNSSRFLQRFMEALEHYAAI 347 99998667789999**********************99999998.99************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 fd+lea+lp+++ er +E+ ++grei ++va eg+ r+erhe++ +W++ ++++ F++vp s +a +qaklllr ++ s+gy+++ ++sl+lg Zosma6g01140.1 348 FDTLEATLPPNNYERLLLENIWFGREIADIVAGEGRCRQERHERFDRWEHLMKTSDFTSVPSSPFALSQAKLLLRLHYpSEGYQLQMIKDSLFLG 442 ******************************************************************************************* PP GRAS 362 WkdrpLvsvSaW 373 Wk++pL+svS+W Zosma6g01140.1 443 WKTNPLFSVSSW 454 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.98	43	434	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-113	71	454	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010223	Biological Process	secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MLTSFNTSTH EEEDEQETHA NQRTRLDVVC RNRNIDSRHA AAAAAAFVIS QSDRNTQVDV 60 NVDVDEDTSL RLLLNCANLI HQSDFTAARR LLSVVSTNTS AQPPELSGAD RVAQQFASAL 120 SIRLNHLSLS FSLQPPPSQP NPDDLQSCYL SLNKITPFLR FCHLTANQAI LEAVDRRQPL 180 HILDFDTMHG VQWPPLMHAI AERADPNQPP SLRITGTGTD LDILRRTGER LKTFADTLGL 240 RFQFHPLLLI PPNRIGTGSS TLSASCTQNI SPSTFQLHPG ETLAVNCVLF LHTLLKDNGD 300 DDEVRSFLQA IKTMNPAVVT IAEREASHNS SRFLQRFMEA LEHYAAIFDT LEATLPPNNY 360 ERLLLENIWF GREIADIVAG EGRCRQERHE RFDRWEHLMK TSDFTSVPSS PFALSQAKLL 420 LRLHYPSEGY QLQMIKDSLF LGWKTNPLFS VSSWH*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MLTSFNTSTH EEEDEQETHA NQRTRLDVVC RNRNIDSRHA AAAAAAFVIS QSDRNTQVDV  60
NVDVDEDTSL RLLLNCANLI HQSDFTAARR LLSVVSTNTS AQPPELSGAD RVAQQFASAL  120
SIRLNHLSLS FSLQPPPSQP NPDDLQSCYL SLNKITPFLR FCHLTANQAI LEAVDRRQPL  180
HILDFDTMHG VQWPPLMHAI AERADPNQPP SLRITGTGTD LDILRRTGER LKTFADTLGL  240
RFQFHPLLLI PPNRIGTGSS TLSASCTQNI SPSTFQLHPG ETLAVNCVLF LHTLLKDNGD  300
DDEVRSFLQA IKTMNPAVVT IAEREASHNS SRFLQRFMEA LEHYAAIFDT LEATLPPNNY  360
ERLLLENIWF GREIADIVAG EGRCRQERHE RFDRWEHLMK TSDFTSVPSS PFALSQAKLL  420
LRLHYPSEGY QLQMIKDSLF LGWKTNPLFS VSSWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-60	75	454	25	378	Protein SCARECROW
5b3h_A	2e-60	75	454	24	377	Protein SCARECROW
5b3h_D	2e-60	75	454	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008811155.1	1e-167	scarecrow-like protein 18
Refseq	XP_010928897.2	1e-167	protein MONOCULM 1
Swissprot	Q9ZWC5	1e-117	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A0K9NRG6	0.0	A0A0K9NRG6_ZOSMR; GRAS family transcription factor
STRING	XP_008811155.1	1e-167	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-115	GRAS family protein

Link Out ? help Back to Top
Phytozome	Zosma6g01140.1

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]