PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g00090.1
Common NameZOSMA_6G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 522aa    MW: 57671.6 Da    PI: 4.7208
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-184188148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lv++v+++G g+W+++ r+ g+ R++k+c++rw ++l
   Zosma6g00090.1 41 KGPWTDAEDAILVEYVRKHGEGNWNAVQRHSGLSRCGKSCRLRWANHL 88
                     79******************************************9986 PP
2Myb_DNA-binding50.16.2e-1694137146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++l+v++++++G++ W++ a  ++ gRt++++k++w++
   Zosma6g00090.1  94 KGSFSPEEEKLIVELHAKMGNK-WARMATSLP-GRTDNEIKNYWNT 137
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4283692IPR017930Myb domain
SuperFamilySSF466894.49E-3038135IPR009057Homeodomain-like
SMARTSM007174.5E-164090IPR001005SANT/Myb domain
PfamPF002498.2E-164188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-234295IPR009057Homeodomain-like
CDDcd001674.41E-124388No hitNo description
SMARTSM007172.0E-1593141IPR001005SANT/Myb domain
PROSITE profilePS5129418.73393143IPR017930Myb domain
PfamPF002496.0E-1594137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2496141IPR009057Homeodomain-like
CDDcd001672.12E-1196137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MPPAPNDSDN GMTSTDEIDP PSSEEGGSRG SFSGGNAPLK KGPWTDAEDA ILVEYVRKHG  60
EGNWNAVQRH SGLSRCGKSC RLRWANHLRP DLRKGSFSPE EEKLIVELHA KMGNKWARMA  120
TSLPGRTDNE IKNYWNTRIK RCQRAGLPLY PPDISSQIMN EKQQNMNIDD FIMGDKQHNE  180
PSYNIADILV DDIQSNQEVS NVSPYSSFCS SSSMANRGMG SHPDRMSPIP IDLYKQLREN  240
DELLSDLGIP RIPKFNLFPY ENSGKFSRSF NLGFPYEPDP DPGRHSHLHG NFSTFQSFQG  300
TVKVELPSLQ YPDNGNDSWP FFPETSPVLS GDAYLKSSPT ASSQSEFLPR RNDELLESLV  360
YGSQALSCNS RMQLYDKSLD AGNPSLYDVI RSPLHDPGSD NKWDANSSFI PLNSFASSVS  420
NEFFPLTTGF TLCGTPPEHA SSTMESSGGS YSSECLPSTS GNEFGGMLME NLSGFNVEKQ  480
AAANGGLLIP GTEEQYQYLS EDDVYIKHSL HDHTEDAPVF G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32351411106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NQP60.0A0A0K9NQP6_ZOSMR; Transcription factor GAMYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.18e-72myb domain protein 65