PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma69g00950.1
Common NameZOSMA_69G00950
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 877aa    MW: 97328 Da    PI: 9.267
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma69g00950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.72.7e-22783863186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W  +e++ Li++r ++++r+++ k ++ lWee+s ++ ++g  rsp qC++ w++l k+ykk ++++k+     ++t+pyf+ ++
  Zosma69g00950.1 783 KWEPEEIQMLIKIRGQLDNRFKKVKGRMILWEEISTVLLSHGTDRSPMQCRSLWSSLMKKYKKNQTIKKD-----QRTWPYFEAMH 863
                      7*****************************************************************9998.....579******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.106.4E-6880330IPR001279Metallo-beta-lactamase
SuperFamilySSF562812.12E-7081495IPR001279Metallo-beta-lactamase
SMARTSM008496.9E-2493290IPR001279Metallo-beta-lactamase
PfamPF007531.2E-994238IPR001279Metallo-beta-lactamase
PfamPF075218.8E-8434467IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
Gene3DG3DSA:1.10.10.607.9E-5780842IPR009057Homeodomain-like
SMARTSM007170.0022780842IPR001005SANT/Myb domain
PROSITE profilePS500907.48782840IPR017877Myb-like domain
PfamPF138379.2E-18782863No hitNo description
CDDcd122031.64E-19782845No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MVTLSVIPHL CPCSRFTRRS TLLKSSISSS IAPPSTPKGD LGSKMPHRRT RRRTDGPRKS  60
MEDSVKRKLE QFYEGSEGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GIMFPDYEDL  120
GVQKIIPDTT FIRRWSHKIE AMVITHGHED HIGALPWVIP ALDSNTPIFA SSFTMELMKK  180
RLKEFGIFVP SRLKVFNVRK KFVAGPFEVE PIRVTHSIPD CSGLVLRCGD GTILHTGDWK  240
IDESPLDGKS FDREALEQLS KEGVTLMMSD STNILSPGRS ISETAVAESL LRNISAAEGR  300
VITTQFASNI HRLGSVKAAA DLTGRKLVFV GMSLRMYLEA AFRDGKAPFD PSTLVKVEDI  360
DSYAPKDLLI VTTGSQAEPR AALNLASFGS SHALKLGKDD VILYSAKVIP GNETRAMKML  420
NRIAELGPKI VMGKNEFLHT SGHAYRDELD EVLKIVKPQH FLPIHGELLF LKEHELLGKS  480
TGIQHTTVIK NGEMLGVSHL RNRRVLSNGF ASLGKQDFQL MYSDGNKAFG TSAELCIDER  540
LRISSDGIIV VSMQIKRPEN IDGSSQTHVK GKLRITTRCL WLDQGKLLDA LYKAAYAGLL  600
SCPVNSPLAH MERIVSEVLR KMVRKYSSKR PEVIVIAVEN TADVFAEGLR TPLNKKSDVD  660
FGLPTLSQPS DENIFRNKSE KNLKENSIVD ATSSLGPIFE EDNVAKVELL PEDSESRVSS  720
SPNLHNLSNL SGLSSADEDI NSESSSGTCL KTIDSEKIRM AEQQLASPTS SQAKTLTSAK  780
INKWEPEEIQ MLIKIRGQLD NRFKKVKGRM ILWEEISTVL LSHGTDRSPM QCRSLWSSLM  840
KKYKKNQTIK KDQRTWPYFE AMHGILSTNN DTLKAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A3e-848163919560RIBONUCLEASE J
5a0t_B3e-848163919560RIBONUCLEASE J
5a0v_A3e-848163919560RIBONUCLEASE J
5a0v_B3e-848163919560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811801.10.0ribonuclease J
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A0K9NTK30.0A0A0K9NTK3_ZOSMR; Metallo-beta-lactamase family protein
STRINGXP_008811801.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]