PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma68g00310.1

Common Name

ZOSMA_68G00310

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 380aa MW: 41358.5 Da PI: 8.4073

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma68g00310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.8e-38	39	97	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprCds ntkfCyynnysl+qPr++CkaCrryWt+GG+lrnvP+Ggg+rknkks+ Zosma68g00310.1 39 DVFNCPRCDSPNTKFCYYNNYSLTQPRHYCKACRRYWTRGGTLRNVPIGGGCRKNKKSK 97 6689****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-24	38	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	40	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.77	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDSTLPVTVL ANEAAGSNDQ RKGGRRRSVS GLQPPSVEDV FNCPRCDSPN TKFCYYNNYS 60 LTQPRHYCKA CRRYWTRGGT LRNVPIGGGC RKNKKSKSSH YSSSSPPSSS SSSSFTTTPS 120 MDSGSSPFKL FHQLSSSYFN LGTSTELFPS SRFKYSTSTS GCGLLANEFS NISISNSSQG 180 QGVVGARGSP VVSSDLLDGV VNAPDFSQYS ITRNTSMMDN TCALASNINE PSPSINTTQD 240 LYWKLQQQRL GFNIPYGGQG HQTNIITTKE ITSTSTACIH HQNQNQHHRS VSFHAPVYTE 300 SDLSLVPAIN VASFLGDEGM ITTPSNHHHQ YWLNNTDGGG SSNWNNTTRS NNTDENCTDV 360 LKTLKEMHHL ITALPFGSN*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDSTLPVTVL ANEAAGSNDQ RKGGRRRSVS GLQPPSVEDV FNCPRCDSPN TKFCYYNNYS  60
LTQPRHYCKA CRRYWTRGGT LRNVPIGGGC RKNKKSKSSH YSSSSPPSSS SSSSFTTTPS  120
MDSGSSPFKL FHQLSSSYFN LGTSTELFPS SRFKYSTSTS GCGLLANEFS NISISNSSQG  180
QGVVGARGSP VVSSDLLDGV VNAPDFSQYS ITRNTSMMDN TCALASNINE PSPSINTTQD  240
LYWKLQQQRL GFNIPYGGQG HQTNIITTKE ITSTSTACIH HQNQNQHHRS VSFHAPVYTE  300
SDLSLVPAIN VASFLGDEGM ITTPSNHHHQ YWLNNTDGGG SSNWNNTTRS NNTDENCTDV  360
LKTLKEMHHL ITALPFGSN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NRN1	0.0	A0A0K9NRN1_ZOSMR; Dof zinc finger protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Zosma68g00310.1