PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma68g00150.1 | ||||||||
Common Name | ZOSMA_68G00150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 301aa MW: 34262.2 Da PI: 6.8831 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.3e-09 | 248 | 282 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp+++++ LA+ +gL+++q+ +WF N+R ++ Zosma68g00150.1 248 NWPYPTEADKITLAELTGLDQKQINNWFINQRKRH 282 569*****************************885 PP | |||||||
2 | ELK | 37.1 | 6.5e-13 | 202 | 223 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ++K+ LlrKYsgyL+sL+qEFs Zosma68g00150.1 202 DIKEKLLRKYSGYLSSLRQEFS 223 58*******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 9.7E-19 | 67 | 111 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-19 | 69 | 108 | IPR005540 | KNOX1 |
SMART | SM01256 | 9.7E-21 | 117 | 168 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.4E-20 | 123 | 166 | IPR005541 | KNOX2 |
Pfam | PF03789 | 3.6E-10 | 202 | 223 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.121 | 202 | 222 | IPR005539 | ELK domain |
SMART | SM01188 | 8.2E-7 | 202 | 223 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.536 | 222 | 285 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-19 | 223 | 297 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-13 | 224 | 289 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 227 | 287 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.88E-12 | 234 | 286 | No hit | No description |
Pfam | PF05920 | 4.3E-17 | 242 | 281 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 260 | 283 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MEDGTSTYGH GVQYQQHNSS ASSIHHHHHH PYVDDDLQAL ISRIPPLPPH NPSSSSSSYA 60 SSTTDTYSMK ARITAHPRYL RLLDAYIDCQ KVGAPPEIVS LLDEIRREHS TSNRAPISGH 120 QFADPELDLF MEAYCDVLTK YKADLTRPFD EATSFFSNME LQLSDLFKTA PSIGSSSDNA 180 QAGCDDEGLN GGEICCRDND RDIKEKLLRK YSGYLSSLRQ EFSKKKKKGK LPKEARQTLL 240 DWWNVHYNWP YPTEADKITL AELTGLDQKQ INNWFINQRK RHWKPSETMQ YAVMGRPYYG 300 * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248543.1 | 1e-100 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 1e-89 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A0K9NS52 | 0.0 | A0A0K9NS52_ZOSMR; Putative Homeobox protein knotted-1 | ||||
STRING | XP_010248543.1 | 1e-99 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G23380.1 | 3e-88 | KNOTTED1-like homeobox gene 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma68g00150.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|