PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma68g00130.1
Common NameZOSMA_68G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 288aa    MW: 31383.7 Da    PI: 8.5443
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma68g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.26.2e-20153187135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC +t+TplWR+gp+g+k+LCnaCG++y+k+++
  Zosma68g00130.1 153 CANCDVTSTPLWRNGPRGPKSLCNACGIRYKKEER 187
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.798147183IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-19147199IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-13150187No hitNo description
Gene3DG3DSA:3.30.50.109.7E-17151187IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.59E-12152182No hitNo description
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
PfamPF003201.1E-17153187IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MCVVSHSYPS IFTAIYTYPN DHRKHFYRSP VMFRCGSSGR IDSANAFTIL FDVPATDADP  60
NVPKEEETNN DPFTYYSSSS SSSSSPVDCT LSLGSASTRQ NKPSINTMKS SNGPNTLYWD  120
ILPQAKKTHS PAYDDGTGTG TGTGGESLLS RRCANCDVTS TPLWRNGPRG PKSLCNACGI  180
RYKKEERRAA AAATFTSTSL LPIQQPTIID SQHRNGVNYG GYTHSHPWAH APVSANRMRS  240
GATPISMSSS TGRFSDDNDA ENRGMPYYSW CLNAPPPSRP EFMIKHQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NRM30.0A0A0K9NRM3_ZOSMR; GATA transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-23GATA transcription factor 19