PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma68g00110.1
Common NameZOSMA_68G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 92aa    MW: 10691.9 Da    PI: 6.5329
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma68g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08549244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     ++WT+   +l+ +a + + ++   +W  Iar +g  ++ +++k ++
  Zosma68g00110.1  5 KSWTQKQNKLFERALAVYDKEtsdRWQNIARAVG-DKSVEEVKQHY 49
                     68******************9*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.157257IPR017884SANT domain
SMARTSM007176.3E-7355IPR001005SANT/Myb domain
PfamPF002495.4E-6549IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-13660IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-5659IPR009057Homeodomain-like
CDDcd001672.93E-6649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MTSTKSWTQK QNKLFERALA VYDKETSDRW QNIARAVGDK SVEEVKQHYD LLIEDVKRIE  60
SGMVSYTYGD PSDATRLTDD EQRLLRHLRT Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-25391793RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795931.12e-31protein RADIALIS-like 3
SwissprotQ8GW754e-26RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A0K9NTZ22e-60A0A0K9NTZ2_ZOSMR; MYB transcription factor
STRINGXP_008795931.19e-31(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.12e-28RAD-like 5