PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma66g00010.1 | ||||||||
Common Name | ZOSMA_66G00010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 122aa MW: 14321.6 Da PI: 10.2922 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.7 | 4.7e-19 | 42 | 109 | 54 | 113 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgra 113 ++ewyfFs++dkky+ g+r nra+ g+Wk+tg+dk+++ + +++ ++++ktLvfy gr+ Zosma66g00010.1 42 PQNEWYFFSHKDKKYPIGTRINRAMVVGFWKTTGRDKPIYLSggrnvidgGHKRIWMRKTLVFYMGRT 109 467**************************************9666666655555**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.518 | 1 | 121 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.09E-16 | 40 | 111 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-7 | 42 | 109 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MGSQRYHITL TRYTYTSISI YIHTYKVPII MDVERCRIGS GPQNEWYFFS HKDKKYPIGT 60 RINRAMVVGF WKTTGRDKPI YLSGGRNVID GGHKRIWMRK TLVFYMGRTC SYWTEISLDH 120 A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436417.1 | 5e-31 | NAC domain-containing protein 43 | ||||
Refseq | XP_027063205.1 | 5e-31 | NAC domain-containing protein 76-like | ||||
Refseq | XP_027119768.1 | 5e-31 | NAC domain-containing protein 76-like | ||||
Refseq | XP_027172345.1 | 5e-31 | NAC domain-containing protein 76 | ||||
Swissprot | Q9MA17 | 1e-29 | SMB_ARATH; Protein SOMBRERO | ||||
TrEMBL | A0A0K9NU44 | 9e-85 | A0A0K9NU44_ZOSMR; Uncharacterized protein | ||||
STRING | Sb10g002120.1 | 2e-30 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 5e-32 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma66g00010.1 |
Publications ? help Back to Top | |||
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