PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma63g00340.1 | ||||||||
Common Name | ZOSMA_63G00340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25736.8 Da PI: 9.358 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.1e-17 | 37 | 86 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + +r +lg+f+tae+Aa a++ a++++ g Zosma63g00340.1 37 KYRGVRRRP-WGRFAAEIRDPA----SkQRRWLGSFDTAEQAAVAYDVAAREMQG 86 8********.**********83....25999*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-21 | 37 | 95 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-31 | 37 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.55 | 37 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.17E-30 | 37 | 93 | No hit | No description |
Pfam | PF00847 | 1.9E-10 | 37 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-29 | 37 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEAVFSDGAA RSEKRRRRRK SAKVEEVTEI TCKETVKYRG VRRRPWGRFA AEIRDPASKQ 60 RRWLGSFDTA EQAAVAYDVA AREMQGLKAR TNFTYPCFIP SSDVTSDLYL RNASSHLCHH 120 YRSTNGGCDS GGSVKIGDKT SKVISTSGSG LLEEIVYRFF PKQEKHETGL ILDDKLISAS 180 SSPQVCHNSF YSPETNQDSF PVVSAGRSSV LENFSAYPEL FEIVSSKVAS K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-18 | 38 | 93 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 18 | KRRRRR |
2 | 13 | 19 | KRRRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NV19 | 1e-171 | A0A0K9NV19_ZOSMR; Uncharacterized protein | ||||
STRING | XP_004161084.1 | 2e-33 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 4e-25 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Zosma63g00340.1 |