PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma600g00010.1
Common NameZOSMA_600G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 494aa    MW: 55364.2 Da    PI: 8.4068
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma600g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.35.8e-14237329390
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y ++A+ +GFsvr  ++++     + ++  +++++ Csk+g+++     ++ +rr++ ++r+gC  ++k k  + +++w+ + ++l+HnH++ 
  Zosma600g00010.1 237 YYDFASFTGFSVRLGSTHNIldkqTGHKILVMKRLLCSKQGSPNLILPPSNGNRRKNDVSRCGCLTSIKFKIIDrSDQWVTHFVNLDHNHPFI 329
                       999**********9998876664244556789************99998999********************9999**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-11237329IPR004330FAR1 DNA binding domain
PfamPF105513.7E-6451486IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MASPTSFCNQ HRPTSLQVSP NTNSIFVTPP SYRSQQFTYD HTNTSCNVSL KFHFNSPQCH  60
TNANTKPSYV GFSTPLNSHA PASNIVQPDF VQCTSAEMKE SSANMSYRTA KIPNSLNYLF  120
NSPHCQTTVN PIDSSVNVCR SLDPDNVRSN FFDSENVQSP SADIVDSSVQ IPAHSDNVSC  180
GTAKTSDNHL KRKFSSTGGY PTSLNNENRS SGYNQSSKLF PIVGEVFPSY EMAVQSYYDF  240
ASFTGFSVRL GSTHNILDKQ TGHKILVMKR LLCSKQGSPN LILPPSNGNR RKNDVSRCGC  300
LTSIKFKIID RSDQWVTHFV NLDHNHPFIT PTKIRYLPIN RSISHTSKIM FSSLADVNVP  360
VSQQAAYFSN QLGGPENMGC MTLDINNMVR DDRIDLKNYD VNLIVEDFEM KKLENAQFFY  420
GLVKDDAGRL KHLFWADPTM IENYKLFGDS VTFDTTYKTN VYSMVFGMFC GVNHHRKTTI  480
FGSAFLRYFL NSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562140.0AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NW180.0A0A0K9NW18_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-32FAR1-related sequence 5