PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g01920.1
Common NameZOSMA_5G01920
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92121.5 Da    PI: 6.2094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g01920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-181876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Zosma5g01920.1 18 KYVRYTPEQVEALERLYHECPKPTSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    5679*****************************************************97 PP
2START1731.9e-541623702205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +a e+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++++ a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+ +   g+++l 
  Zosma5g01920.1 162 IADETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVSISHGCTSVASRACGLVGLDPT-KVAEILKDRQLWFHDCRSVDVINVLPTTngGTIELL 255
                     688999****************************************************.8888888888***************87667****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S+   q+  +    +++vRae+lpSg+li+p+++g+s +++v h+dl+ ++++++lr+l+
  Zosma5g01920.1 256 YMQLYAPTTLAPpRDFWLLRYTSMLEDGSLVVCERSLGAMQSGASmppVQHFVRAEMLPSGFLIRPCEGGGSIIHIVNHMDLEPWSVPEVLRPLY 350
                     *************************************8877655544489********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++a+++kt++a+l+++++
  Zosma5g01920.1 351 ESSTAFAQKTTMAALRHLRQ 370
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-18876IPR009057Homeodomain-like
PROSITE profilePS5007115.5321377IPR001356Homeobox domain
SMARTSM003893.3E-161581IPR001356Homeobox domain
CDDcd000868.16E-171678No hitNo description
SuperFamilySSF466895.56E-171781IPR009057Homeodomain-like
PfamPF000464.0E-161876IPR001356Homeobox domain
CDDcd146861.93E-670109No hitNo description
PROSITE profilePS5084825.804152366IPR002913START domain
CDDcd088752.31E-77156372No hitNo description
Gene3DG3DSA:3.30.530.202.2E-23159367IPR023393START-like domain
SuperFamilySSF559618.52E-38161373No hitNo description
SMARTSM002342.8E-38161371IPR002913START domain
PfamPF018521.3E-51162370IPR002913START domain
PfamPF086701.6E-41695838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MMAVVSCKDG KNGMDPGKYV RYTPEQVEAL ERLYHECPKP TSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQMSQ LVCENSFFRQ  120
QSNTTALTTT DTSCESVVTS GQPQLTTQHP PRDASPAGLM SIADETLAEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVSIS HGCTSVASRA CGLVGLDPTK VAEILKDRQL WFHDCRSVDV  240
INVLPTTNGG TIELLYMQLY APTTLAPPRD FWLLRYTSML EDGSLVVCER SLGAMQSGAS  300
MPPVQHFVRA EMLPSGFLIR PCEGGGSIIH IVNHMDLEPW SVPEVLRPLY ESSTAFAQKT  360
TMAALRHLRQ IAQETSHSSS GWGRRPAALR ALSYRLRRGF DEALNGFTDE GWSILGTEAV  420
DDVTILINSS ASKTMGLNLG FTAGFPASTN TSILCARASM LLQNVSPTML LRFLREHRSE  480
WADSNIDIYC AAAVKASPCS LPGSFVGGFG GQVILPLGHT IEHEEFLEVL KLETIGHCQD  540
PITPQDLFFL QLCSGADESA VGTCADLVFA PIDASFSDDT PLLPSGFRII PLDFVSDGSS  600
PNRTLDLASS LEIGSVGNKI SANFSGNSGN MRSVMTIAFQ FAFETQLQEN VALMARQYMR  660
SIISSVQRVA LALSPSRMGS LGDMKPLSGS TEALNLARWI DHGYRCHAGV ELFKPAMEGS  720
GVSILKSFWQ HSDAIICCSL KANPVFTFAN QAGLDMLETT LGVLQQDINL EKIFGNRVKS  780
ISLEFPNIMQ QGFACLDGGI CVSSMGRPVS YESAVAWKVL NEENNPQCIC LMFLNWSFAS  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267183.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
RefseqXP_010267184.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0K9NWG20.0A0A0K9NWG2_ZOSMR; Homeobox-leucine zipper protein ATHB-15
STRINGXP_010267183.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]