PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma5g01690.1 | ||||||||
Common Name | ZOSMA_5G01690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 26898.1 Da PI: 6.3569 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.3 | 4.8e-43 | 5 | 136 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p GfrF Pt+eelv++yL++k+e++++++e+vi+ v++y++ePw+L++ + ++++++fF++ ++++a+g r++r+t+sgyWkatg+ Zosma5g01690.1 5 PCGFRFYPTEEELVSFYLRHKLENTRNDIERVIPVVEVYSFEPWQLRQvsgepN--IgKSEQCFFFCPMQQREAQGGRPTRTTASGYWKATGTPV 97 89***************************99***************85344332..2356699******************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +v+s+ + +++g+kkt+vfy+g+ap+g kt+W m+ey+ Zosma5g01690.1 98 RVFSSsnTVQVIGIKKTMVFYHGKAPHGMKTEWKMNEYK 136 ***98655567***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-46 | 2 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.983 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-22 | 5 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSNIPCGFRF YPTEEELVSF YLRHKLENTR NDIERVIPVV EVYSFEPWQL RQVSGEPNIG 60 KSEQCFFFCP MQQREAQGGR PTRTTASGYW KATGTPVRVF SSSNTVQVIG IKKTMVFYHG 120 KAPHGMKTEW KMNEYKALRP DQDDANSFRL CNDFSLCRIY IKNGCLRSFD RRPAAATSAN 180 VTQEEHQAQE YIVEQEVDIS QHSIPSSNQG DYDDNFDPFE NMDWKRLFTS LT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-33 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-33 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-33 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-33 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-33 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-33 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-33 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-33 | 3 | 162 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008776160.1 | 8e-81 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0K9NW77 | 1e-176 | A0A0K9NW77_ZOSMR; NAC domain-containing protein 90 | ||||
STRING | XP_008776160.1 | 3e-80 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-66 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Zosma5g01690.1 |
Publications ? help Back to Top | |||
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