PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g01150.1
Common NameZOSMA_5G01150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 751aa    MW: 83557 Da    PI: 4.5534
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g01150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.12.2e-24196249155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+ Wt++LHe+F++av+++ G+++ +Pk+ile+++ +gLt+e+v+SHLQkYRl
  Zosma5g01150.1 196 KRRILWTTDLHEKFIKAVNRI-GIHRVVPKKILEIIDAPGLTRENVASHLQKYRL 249
                     6799*****************.********************************8 PP
2Response_reg71.34.1e-24131201108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+ + ++++ ++l+  +y +v+++++++ al+ll  k+ ++Dl+l+Di mp++dG+ ll +ir e  +lp+i+++a +  e++++ +  G
  Zosma5g01150.1  13 VLLVDDDTTCLKVVGKMLQCCKY-NVTSCSEPKGALDLLfkKKTHFDLVLTDIGMPEIDGFMLLDRIRHEL-DLPVIMMSADNHFETIVKGIANG 105
                     89*********************.***************655555**********************8755.9********************** PP

                     ESEEEESS--HHHHH CS
    Response_reg  94 akdflsKpfdpeelv 108
                     a  + +Kp +++ l 
  Zosma5g01150.1 106 ATFYMTKPLKMDMLS 120
                     *********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.5E-359134No hitNo description
SuperFamilySSF521723.27E-3110128IPR011006CheY-like superfamily
SMARTSM004485.7E-2511122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011037.26712127IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.03E-2414127No hitNo description
PROSITE profilePS512949.853193252IPR017930Myb domain
SuperFamilySSF466892.69E-17194253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-25194254IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-22196249IPR006447Myb domain, plants
PfamPF002491.2E-5201248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MDPMEAFAQG VKVLLVDDDT TCLKVVGKML QCCKYNVTSC SEPKGALDLL FKKKTHFDLV  60
LTDIGMPEID GFMLLDRIRH ELDLPVIMMS ADNHFETIVK GIANGATFYM TKPLKMDMLS  120
TIWQHVLRMS DDKLLDASKI LSLKYNGKLK DRNKGTGFGG SRFNIDDYSK KRREEEIDKE  180
EDDEDVEEND DSAKKKRRIL WTTDLHEKFI KAVNRIGIHR VVPKKILEII DAPGLTRENV  240
ASHLQKYRLY LKRVEEANLY AAIGSKPPNR VPMKSIFASI PPQVNPFNKN MQSPFFTHQT  300
PPYFNHQASC SYQVNNFSNI SEPIVPQMPN IAMNISQTQE RSPQDVEPQM MQNSTHESLL  360
TAMGAYTHEG VPQNCNQQIV QNNFLSTNGM NMLNNNNTAQ EYGKIYNAMA NAAFLDNGNT  420
TMETLDGEMM DNIYDGNNLL GNMSSENNMV ENLSDGNNLG LGNIPYENNM MGNLSGVNNQ  480
GLGSIPDGNN QQGNMYNGNN LMENLYEGNN LPIRNMSEEN NLLGNMSEGN NLLGHMSEGN  540
NLLGHMSEGN NLLGSMPEGN NLPMNMSEGN NLPMNMSEGN NLPVNMSVGS NLPGNMYVGS  600
NFLENMSVGR NLPGNLSDGS NLLGNMSVKS NLLGNMSDGN VEAGNMRSKP LPEVNNNVIM  660
PQTRKEFGGS NITPSEIGAK AMTGNDHTKK EQIVFNNPIN EDELDQTFYQ AIQGFIECTD  720
STDLDDIFRM SEVETTVNEL EKELMDEVKD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-20192254163ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KKKTH
2193197KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NWB10.0A0A0K9NWB1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.13e-62response regulator 1