PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma59g00470.1 | ||||||||
Common Name | ZOSMA_59G00470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24874 Da PI: 5.8865 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l +++ +G g W+ a+ g++Rt+k+c++rw++yl Zosma59g00470.1 27 KGPWTMEEDLILMNYISIHGEGVWNNLAQSAGLKRTGKSCRLRWLNYL 74 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE +l++d+ +++G++ W++Iar m+ gRt++++k++w++ Zosma59g00470.1 80 RGNITPEEKLLIIDLQARWGNR-WSKIARQMP-GRTDNEIKNYWRT 123 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 19 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.264 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.68E-29 | 26 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 27 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.90E-9 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 24.24 | 75 | 129 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 78 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-14 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-10 | 84 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MDNKKACSSN SSSSSRTQKQ ESEVIRKGPW TMEEDLILMN YISIHGEGVW NNLAQSAGLK 60 RTGKSCRLRW LNYLRPDIRR GNITPEEKLL IIDLQARWGN RWSKIARQMP GRTDNEIKNY 120 WRTRIQKKEA AVVVLKQSEE ISIREEYDCY DDNNNNNIKY DQNSSMMQMT EMSMDQKSLP 180 PVYISPVDDD FLPDPSSAQS SDCLWGVDDL WSMH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-23 | 9 | 128 | 9 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585163.1 | 6e-73 | myb-related protein 305-like | ||||
Swissprot | P81391 | 9e-70 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A0K9NUL7 | 1e-157 | A0A0K9NUL7_ZOSMR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_186.7 | 4e-71 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 4e-69 | myb domain protein 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma59g00470.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|