PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma59g00170.1 | ||||||||
Common Name | ZOSMA_59G00170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | GRF | ||||||||
Protein Properties | Length: 243aa MW: 26984.3 Da PI: 8.6427 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.4 | 1.2e-23 | 99 | 142 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e Zosma59g00170.1 99 DPEPGRCRRTDGKKWRCSKEACQDSKYCERHMHRGKNRSRKPVE 142 79***************************************998 PP | |||||||
2 | QLQ | 54.7 | 3.1e-19 | 28 | 63 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l++Ky+a + P+P++L+++i++ Zosma59g00170.1 28 PFTASQWQELENQALIFKYMACGYPIPSDLILHIRR 63 9********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.6E-9 | 27 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.321 | 28 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.1E-13 | 28 | 62 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.274 | 99 | 143 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-19 | 100 | 142 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MMMMMMSGSN GGAGGNSTSN STNNNKYPFT ASQWQELENQ ALIFKYMACG YPIPSDLILH 60 IRRSVLMDST TAASLFPLQP TIGGWGCYQM SGGRKVTEDP EPGRCRRTDG KKWRCSKEAC 120 QDSKYCERHM HRGKNRSRKP VEMSLNTSNS SNNNNSSNGT NTYSGSSSLS IPITPASENN 180 NNNNQPSSYP YGPYSSYSIR PPVMGLATHK DWRLVLCLFD LLIFFIHISY LETTMTTDTT 240 MD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647996.1 | 6e-63 | PREDICTED: growth-regulating factor 1 | ||||
TrEMBL | A0A0K9NWP0 | 0.0 | A0A0K9NWP0_ZOSMR; Growth-regulating factor 1 | ||||
STRING | OB02G41370.1 | 2e-62 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 9e-46 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma59g00170.1 |