PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma58g00530.1
Common NameZOSMA_58G00530
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family CO-like
Protein Properties Length: 404aa    MW: 45361.2 Da    PI: 6.8578
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma58g00530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.75.6e-091357341
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     +r C+ + +k+++++C  ++ +lC++C    H+       H++v 
  Zosma58g00530.1 13 ARACDSCLRKRARWYCAADDAFLCQSCDNLVHSAnqlarrHERVM 57
                     578*****************************6578888888775 PP
2CCT70.73.7e-24347389143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
  Zosma58g00530.1 347 REAKVMRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 389
                      9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.3E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7931158IPR000315B-box-type zinc finger
PfamPF006433.1E-81357IPR000315B-box-type zinc finger
CDDcd000211.25E-81456No hitNo description
PROSITE profilePS5101716.083347389IPR010402CCT domain
PfamPF062031.2E-18347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSETAAAVGT RTARACDSCL RKRARWYCAA DDAFLCQSCD NLVHSANQLA RRHERVMLKS  60
MSLPAKTPIS DDTTVPSWDQ AVRRKARSPR YHNNNKKKLG EAMQGKNKTC LVVPDLEATA  120
GTDESGGADE EEEDEKFICR VPVLDRSMIS ESHLSPLSMF SEEGRDGRRG GCVVSPAAEK  180
VVEEYGDGFS SPLGFLPSNM DMEEFAMDVE SLLGQGLDHE SFSMDDLGLS ESRDYGVEHH  240
FLGEKDGKVK EEDTEESLRR LAKVEITDQI LVDDQSPSQP PRKTISLKLN YKAVVDAWPS  300
SSPWVDGVQP RFNPNDYWPD NTTEMMLSGR GDQIYLTRPP SVLDIGREAK VMRYKEKRRT  360
RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT CLSFPSAGAT TVF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357373RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022115.11e-91PREDICTED: zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A0K9NX560.0A0A0K9NX56_ZOSMR; Zinc finger protein CONSTANS-LIKE 16
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-72B-box type zinc finger protein with CCT domain