PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma58g00470.1
Common NameZOSMA_58G00470
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 373aa    MW: 42220.4 Da    PI: 4.8064
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma58g00470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.34.5e-30222277155
          G2-like   1 kprlrWtpeLHerFveaveqLGG.sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt eLH+rFveav++L G se+AtPk++l+lm+++gLt++hvkSHLQkYRl
  Zosma58g00470.1 222 KQRIRWTVELHDRFVEAVNKLDGlSERATPKSVLKLMNMEGLTIHHVKSHLQKYRL 277
                      79*******************88568*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.1E-4110222No hitNo description
SuperFamilySSF466896.09E-17220277IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23222278IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.0E-29223278IPR009057Homeodomain-like
PfamPF002492.1E-8226276IPR001005SANT/Myb domain
PfamPF143795.8E-17313359IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MCCGQSPTLE TSLFDQMESF NMAKRKQTNS LQETSSQTST SCSSLFSYDK PFGKLPFLPN  60
SLLEKTHHMD VSQSPSSMLL TSDGVFSQYG DRDQSGADDL STGIFNVSDD LDGNKTQISE  120
DFSEQFNLQI LSEQLGIQIA DTDEYPQLND IYQMPQTSSM PMMTGSSENS QLNEVYQMPQ  180
ISSVPMMAVS CEYSQPDQKL VTSPVMLEKS NPSTPTNAPS NKQRIRWTVE LHDRFVEAVN  240
KLDGLSERAT PKSVLKLMNM EGLTIHHVKS HLQKYRLAKY LPEAREDKKT TRFREEENVS  300
SRNQTEICIN GNVQIAEALR MQIEMQKQLH EQLEKQRALQ LRTEENARYL QKLLDGQEQA  360
NPVCPSLTDI FR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-23222280259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-23222280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-23222280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-23222280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-23222280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-23222280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-23222280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-23222280259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NUY40.0A0A0K9NUY4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.24e-60G2-like family protein