PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma57g00600.1 | ||||||||
Common Name | ZOSMA_57G00600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NF-YB | ||||||||
Protein Properties | Length: 84aa MW: 9138.6 Da PI: 11.0059 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 76.5 | 3.8e-24 | 16 | 61 | 3 | 48 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvts 48 +drflPianvsrimk++lP nakisk+aket+qecvse++sf++ Zosma57g00600.1 16 SNDRFLPIANVSRIMKRALPINAKISKEAKETIQECVSEYVSFISV 61 68*****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-21 | 10 | 60 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.0E-15 | 17 | 60 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-14 | 20 | 62 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MVGSSSNSNS KRDAASNDRF LPIANVSRIM KRALPINAKI SKEAKETIQE CVSEYVSFIS 60 VKRLKSVTVR NVKLSTGMTF FGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-18 | 16 | 82 | 3 | 75 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-18 | 16 | 82 | 3 | 75 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139999.1 | 3e-24 | PREDICTED: nuclear transcription factor Y subunit B-3 | ||||
Refseq | XP_008464158.1 | 3e-24 | PREDICTED: nuclear transcription factor Y subunit B-3 | ||||
Refseq | XP_008464159.1 | 3e-24 | PREDICTED: nuclear transcription factor Y subunit B-3 | ||||
Refseq | XP_022140566.1 | 9e-25 | nuclear transcription factor Y subunit B-3-like, partial | ||||
Swissprot | Q69J40 | 2e-23 | NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | A0A0K9NVD7 | 2e-52 | A0A0K9NVD7_ZOSMR; Nuclear transcription factor Y subunit B-3 | ||||
STRING | XP_008464158.1 | 1e-23 | (Cucumis melo) | ||||
STRING | XP_004139999.1 | 1e-23 | (Cucumis sativus) | ||||
STRING | XP_004154508.1 | 1e-23 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-25 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Zosma57g00600.1 |
Publications ? help Back to Top | |||
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