PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma57g00400.1
Common NameZOSMA_57G00400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 812aa    MW: 88582.5 Da    PI: 5.4633
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma57g00400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.8e-20126181156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r++ +++t++q++eLe+lF+++++p +++r eL+k+l L+ rqVk+WFqNrR+++k
  Zosma57g00400.1 126 RKRYHRHTPQQIQELEALFKECPHPEEKQRLELSKRLCLESRQVKFWFQNRRTQMK 181
                      789999***********************************************999 PP
2START192.81.6e-603305571206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      e+a+ a++el+k+++ + p+W++s     + ++++e+ ++f++  +     + +ea+r++g v+ ++  lv +l+d + +W+  +     +a+t
  Zosma57g00400.1 330 EVALMAMDELMKMVQMDGPLWSTSLetgiDTLKYEEYNRIFPRCIGpkpdgFVSEASRETGTVIINSLSLVDTLMDAN-RWSDIFScmiaRAST 422
                      578899***********************************998889***9***************************.99999999999**** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                      ++vissg      g lqlm aelq+lspl p R++ f+R+++q+g+g+w++vdvSvds +++++   s  ++ +++lpSg+++++++ng+skvt
  Zosma57g00400.1 423 TDVISSGvagsrnGGLQLMHAELQVLSPLIPiREVNFLRFCKQQGDGVWAVVDVSVDSIRDNSTssaSNTFMSCRRLPSGCVVQDMPNGYSKVT 516
                      **************************************************************99988889************************ PP

                      EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      w+eh++++++++h+l+rsl++sg+ +ga++w+atl+rqce+
  Zosma57g00400.1 517 WLEHAEYDESSVHQLYRSLLRSGMGFGAQRWLATLNRQCEC 557
                      ***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-19114183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-21122191IPR009057Homeodomain-like
PROSITE profilePS5007117.232123183IPR001356Homeobox domain
CDDcd000862.05E-17125183No hitNo description
SMARTSM003898.6E-15125187IPR001356Homeobox domain
PfamPF000465.4E-18126181IPR001356Homeobox domain
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PROSITE profilePS5084841.168321560IPR002913START domain
SuperFamilySSF559619.07E-31323557No hitNo description
CDDcd088751.26E-112326556No hitNo description
SMARTSM002343.3E-44330557IPR002913START domain
PfamPF018528.8E-53330557IPR002913START domain
SuperFamilySSF559613.94E-24585807No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MSLGGFLDDG NTNGGARVVV DIPPYSTAPM PAASTASAGL SQLQQHQRIL TPPLLPKYMF  60
SSTGLSLGLQ TNINGAVEMM NRIGSVEFDA NGRSREDEYE SRSGSDNVEA GSGDDLFAEN  120
PPGVKRKRYH RHTPQQIQEL EALFKECPHP EEKQRLELSK RLCLESRQVK FWFQNRRTQM  180
KTQLERHENS ILRQENDKLR AENMSIRESM RNPMCTSCNS PAMLGEVSLE EQHLRFENAR  240
LKDELDRVCN LAGKFLGRPL SSVGAVVPPL QLPMPNSSLA LGVGGGNDFG IGFGSVTTNN  300
NSMAPVSNFV STGMSPHMGG GGMEGSIYLE VALMAMDELM KMVQMDGPLW STSLETGIDT  360
LKYEEYNRIF PRCIGPKPDG FVSEASRETG TVIINSLSLV DTLMDANRWS DIFSCMIARA  420
STTDVISSGV AGSRNGGLQL MHAELQVLSP LIPIREVNFL RFCKQQGDGV WAVVDVSVDS  480
IRDNSTSSAS NTFMSCRRLP SGCVVQDMPN GYSKVTWLEH AEYDESSVHQ LYRSLLRSGM  540
GFGAQRWLAT LNRQCECLAI LMSSTASSRE HTGITASGRR SMLKLAQRMT DNFCTGVCPS  600
TVHEWNRLRV GTVDEDVRVM TRKSVDDPGE PPGVVLSAAT SVWLPVSPQR LFDFLRDEHL  660
RSEWDVLSNG VPMQEMAHIA KGKDQGNCVS LLRVSAMNVN QNRMLILQET CTDASGSLVV  720
YAPVDIPAMQ SVMSGDDSAY VALLPSGFAI VPDNSSSKGG GGETSTTGSL LTVAFQILVN  780
SLPTAKLTVE SVETVNNLIS CTVEKIKSAL E*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083470.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A0K9NVB80.0A0A0K9NVB8_ZOSMR; Homeobox-leucine zipper protein 3
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]