PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma55g00400.1
Common NameZOSMA_55G00400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 329aa    MW: 36865.2 Da    PI: 6.7927
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma55g00400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.4e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++  + G g+W+ Iar  g+ R++k+c++rw +yl
  Zosma55g00400.1 22 KGLWSPEEDDKLMRYMMRSGHGCWSDIARNAGLLRCGKSCRLRWINYL 69
                     678*****************************99************97 PP

2Myb_DNA-binding50.26e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v+++ +lG++ W+ Ia  ++ gRt++++k++w++
  Zosma55g00400.1  75 RGAFSPQEEDLIVQLHSLLGNR-WSQIAGNLP-GRTDNEIKNFWNS 118
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2071769IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-231972IPR009057Homeodomain-like
SuperFamilySSF466891.42E-2820116IPR009057Homeodomain-like
SMARTSM007177.0E-122171IPR001005SANT/Myb domain
PfamPF002495.8E-142269IPR001005SANT/Myb domain
CDDcd001672.11E-102569No hitNo description
PROSITE profilePS5129424.95470124IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2573124IPR009057Homeodomain-like
SMARTSM007175.3E-1574122IPR001005SANT/Myb domain
PfamPF002492.0E-1475118IPR001005SANT/Myb domain
CDDcd001671.02E-1077117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRKPGDHSVQ TSTGMAMGKL RKGLWSPEED DKLMRYMMRS GHGCWSDIAR NAGLLRCGKS  60
CRLRWINYLR PDLKRGAFSP QEEDLIVQLH SLLGNRWSQI AGNLPGRTDN EIKNFWNSTI  120
KKRLKMTSAF IESSQSYKYG SNSDQLLLQQ LPASTTMKIK NIGRAHHQNS CMFIDSSSSC  180
SPSSIQDMNH LMINASFFTQ QDHHNTTSGL PSENPGYPRS FAPPPATSVP FVFEDGFLEN  240
HGGMASGSMS TADCTGRSSG EMYNHHHHHQ HDQLFVSFEP HDNAVATGDH AGNITDKIDD  300
NMKMGDWNLE EYLIEDANSF PLLDFHVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-272012425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NWF70.0A0A0K9NWF7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.15e-67myb domain protein 46