PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma55g00400.1 | ||||||||
Common Name | ZOSMA_55G00400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36865.2 Da PI: 6.7927 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.4e-15 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ + G g+W+ Iar g+ R++k+c++rw +yl Zosma55g00400.1 22 KGLWSPEEDDKLMRYMMRSGHGCWSDIARNAGLLRCGKSCRLRWINYL 69 678*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 6e-16 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l+v+++ +lG++ W+ Ia ++ gRt++++k++w++ Zosma55g00400.1 75 RGAFSPQEEDLIVQLHSLLGNR-WSQIAGNLP-GRTDNEIKNFWNS 118 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.207 | 17 | 69 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 19 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-28 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-12 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-14 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.11E-10 | 25 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.954 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-25 | 73 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-15 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 75 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-10 | 77 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MRKPGDHSVQ TSTGMAMGKL RKGLWSPEED DKLMRYMMRS GHGCWSDIAR NAGLLRCGKS 60 CRLRWINYLR PDLKRGAFSP QEEDLIVQLH SLLGNRWSQI AGNLPGRTDN EIKNFWNSTI 120 KKRLKMTSAF IESSQSYKYG SNSDQLLLQQ LPASTTMKIK NIGRAHHQNS CMFIDSSSSC 180 SPSSIQDMNH LMINASFFTQ QDHHNTTSGL PSENPGYPRS FAPPPATSVP FVFEDGFLEN 240 HGGMASGSMS TADCTGRSSG EMYNHHHHHQ HDQLFVSFEP HDNAVATGDH AGNITDKIDD 300 NMKMGDWNLE EYLIEDANSF PLLDFHVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 20 | 124 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NWF7 | 0.0 | A0A0K9NWF7_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9821 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 5e-67 | myb domain protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Zosma55g00400.1 |