PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma54g00300.1 | ||||||||
Common Name | ZOSMA_54G00300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ARF | ||||||||
Protein Properties | Length: 511aa MW: 56605.6 Da PI: 6.55 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.1 | 2.8e-22 | 117 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +a+++ + ++ + t++ +d +gr W++++iyr++++r++lt+GW+++v+ ++L +gD++vF ++ Zosma54g00300.1 117 FSKTLTQSDANNGGGFSVPRFCADTIlppldynQDPPVQ--TISAQDVHGRNWDFRHIYRGTPRRHLLTTGWSRYVNYKRLIAGDSIVFA--KN 206 88******************999999****996555555..8************************************************..77 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 se++ +++++r Zosma54g00300.1 207 SEGSIFIGIRRG 218 99999***9986 PP | |||||||
2 | Auxin_resp | 60.1 | 8.8e-21 | 239 | 320 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 a a+++ +Fevv++Pr ++e+vvk++ ve+++++++ GmR++m +e++d + r+ +Gt++ v+ ++ S+Wr+L+ Zosma54g00300.1 239 AGMATMEAPFEVVFYPRR-STEYVVKASMVEESMRIPWESGMRVRMPVEGDDNAGVRTswhQGTITYVNSNNN--PIISPWRMLQ 320 56788999*********7.78*******************************9866554599******99544..679*****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-27 | 113 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-32 | 113 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.26E-19 | 116 | 217 | No hit | No description |
SMART | SM01019 | 4.7E-16 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-20 | 117 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.238 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-18 | 238 | 320 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MTVSDLPHTH SHFIDHRLWK AIAGNVVVIP TVGSRVYYFP QGHAEHSHPV PDVSHFPLWK 60 PWSMCRVTDV NLLANLDSDE VYYKALLLPT ISTDDRIACQ DLDEKQLQGD SLKFESFSKT 120 LTQSDANNGG GFSVPRFCAD TILPPLDYNQ DPPVQTISAQ DVHGRNWDFR HIYRGTPRRH 180 LLTTGWSRYV NYKRLIAGDS IVFAKNSEGS IFIGIRRGND VLRRNSRYRV TPENAMHAAG 240 MATMEAPFEV VFYPRRSTEY VVKASMVEES MRIPWESGMR VRMPVEGDDN AGVRTSWHQG 300 TITYVNSNNN PIISPWRMLQ VAWDEPEICH NNCVSPWQVE IVPGTHIMSP YSSSFMRFSR 360 GGAGCNHNHN STVVSGMTMS LLNDEIPVGM QGARQNLSTC MFAIKPENDS GQSWYSSGNL 420 SPYVSTELNI YSPPDGSSES LSPESQSSVL ESITTPKSAS AAAAASAGTG TRSFLLFGKL 480 IQLEDPSSPT TSSACCKTCE NLTVCSCERC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-64 | 3 | 340 | 40 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q93YR9 | 1e-104 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | A0A0K9NWH4 | 0.0 | A0A0K9NWH4_ZOSMR; Auxin response factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11355 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-106 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Zosma54g00300.1 |