PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma537g00050.1 | ||||||||
Common Name | ZOSMA_537G00050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | WOX | ||||||||
Protein Properties | Length: 161aa MW: 18128.5 Da PI: 10.4128 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.4e-19 | 96 | 156 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ q+++Le+lF++ n ++ + +++e++ +l +++e++V++WFqNrRa+ k+ Zosma537g00050.1 96 RQRWNPTAMQVQILEDLFKQgNGTLIKGKIKEITLELsqhgEISETNVYNWFQNRRARCKR 156 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 90.2 | 2.1e-29 | 95 | 158 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Pt+ Q++iLe+l+k+G t k +i++it eL+++G+i+++NV++WFQNr+aR ++kq Zosma537g00050.1 95 ARQRWNPTAMQVQILEDLFKQGNGTLIKGKIKEITLELSQHGEISETNVYNWFQNRRARCKRKQ 158 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-12 | 74 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.568 | 92 | 157 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-7 | 94 | 160 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-14 | 95 | 159 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.07E-8 | 96 | 158 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 96 | 156 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MDGSGGGERR KRTRMEKMNS EDIAMGGVGG RVSTAKVMTN EQIEILREQI SIYATLTEQL 60 AAMHKSTSRS GTMTTSSSSY GGNEQQQCHQ NMITARQRWN PTAMQVQILE DLFKQGNGTL 120 IKGKIKEITL ELSQHGEISE TNVYNWFQNR RARCKRKQQR * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 157 | RRARCKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008781303.1 | 3e-45 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 5e-45 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A0K9NZE4 | 1e-114 | A0A0K9NZE4_ZOSMR; WUSCHEL-related homeobox 14 | ||||
STRING | XP_008781303.1 | 1e-44 | (Phoenix dactylifera) | ||||
STRING | MLOC_56124.2 | 1e-44 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-38 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Zosma537g00050.1 |
Publications ? help Back to Top | |||
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