PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma52g01260.1 | ||||||||
Common Name | ZOSMA_52G01260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | YABBY | ||||||||
Protein Properties | Length: 120aa MW: 13186.1 Da PI: 7.8145 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 59.1 | 1.9e-18 | 8 | 82 | 5 | 75 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkv.vtvrCGhCtsllsvnlakas...qllaaeshldeslkeelleel 75 + s+q+Cyv+C+fCnt+l+v P +sl++ +tv CGhC +ll v++ as +l a+ h d +++e + + Zosma52g01260.1 8 DLSNQLCYVHCSFCNTLLLVGAPCNSLLRAeLTVICGHCQTLLRVKIGGASffpLQLVASPHEDSNMNEAVGGRE 82 6899**********************987549***************9998777677777776777777654433 PP | |||||||
2 | YABBY | 28.9 | 3.7e-09 | 88 | 118 | 106 | 133 |
YABBY 106 deev.prvpp..virPPekrqrvPsaynrfi 133 ++e+ p p+ v++PPekrqr+ sayn+f+ Zosma52g01260.1 88 KHEItPTRPRvaVNKPPEKRQRAASAYNQFM 118 3333122222348*****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.8E-25 | 10 | 118 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MSYDPLLDLS NQLCYVHCSF CNTLLLVGAP CNSLLRAELT VICGHCQTLL RVKIGGASFF 60 PLQLVASPHE DSNMNEAVGG RENDNGEKHE ITPTRPRVAV NKPPEKRQRA ASAYNQFMR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248516.1 | 1e-27 | PREDICTED: axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 4e-18 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A0K9NZU0 | 6e-84 | A0A0K9NZU0_ZOSMR; Crabs claw | ||||
STRING | XP_010248516.1 | 4e-27 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-20 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma52g01260.1 |
Publications ? help Back to Top | |||
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