PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma50g00270.1
Common NameZOSMA_50G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 335aa    MW: 37610.3 Da    PI: 5.0463
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma50g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.72e-31163217155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+rW+ eLH+rFv+av++L G+ekAtPk +l+lm+++gLt++hvkSHLQkYR 
  Zosma50g00270.1 163 KPRMRWSVELHDRFVDAVNKLDGAEKATPKGVLKLMNMEGLTIHHVKSHLQKYRH 217
                      79****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-16162217IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28163218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-24163217IPR006447Myb domain, plants
PfamPF002493.6E-8165216IPR001005SANT/Myb domain
PfamPF143792.9E-19246293IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDADSSGAAK MKTKHTDCLD KTTTTFSRFS TFCSSSFSPS LVSLDGYKTL GKLPFLPNPP  60
KFDDNVQITA PIQPSPDPPV LSNAEMGHID DFMTDLLDLS GGEASDATID GYNFTCSEQV  120
DLEMLSEQLG INMTDNGENP QLDEIYELPQ TSPLPQTAIA GYKPRMRWSV ELHDRFVDAV  180
NKLDGAEKAT PKGVLKLMNM EGLTIHHVKS HLQKYRHARC LPEAKQDTNC SEEKKSDQEV  240
RINRNVQLEE SLRMQIEVQK QLHEQLELQR TLQLRIEEHA RYLQKIFDEQ EKTAASLCIG  300
PSQSSTSSID QQPCNEIRHT SPERSVNKRA RMDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-24163219258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-24163219258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-24163219258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-24163219258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-24163219258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-24163219258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-24163219258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-24163219258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q6YXZ4}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278435.14e-90PREDICTED: myb family transcription factor PHL6 isoform X1
RefseqXP_010278436.14e-90PREDICTED: myb family transcription factor PHL6 isoform X1
RefseqXP_010278437.14e-90PREDICTED: myb family transcription factor PHL6 isoform X1
RefseqXP_018674430.14e-90PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like
RefseqXP_018674431.14e-90PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like
RefseqXP_018674432.14e-90PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like
RefseqXP_019055862.14e-90PREDICTED: myb family transcription factor PHL6 isoform X1
SwissprotA2X0Q02e-68PHR3_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A0K9NY630.0A0A0K9NY63_ZOSMR; Uncharacterized protein
STRINGXP_010278435.11e-89(Nelumbo nucifera)
STRINGGSMUA_Achr10P23260_0012e-89(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.27e-53G2-like family protein