PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma50g00250.1 | ||||||||
Common Name | ZOSMA_50G00250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29374 Da PI: 6.522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.8e-14 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv ++ ++G g+W++ ++ g+ R++k+c++rw +yl Zosma50g00250.1 25 KGSWTEAEDVKLVTYILRHGYGNWRALPKQAGLLRCGKSCRLRWVNYL 72 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5.3e-15 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE++ ++++++ lG++ W+ Ia++++ gRt++++k+ w++ Zosma50g00250.1 78 RGNFSKEEEDTIIRLHQFLGNK-WSDIASKLP-GRTDNEIKNVWNT 121 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.231 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-28 | 22 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-10 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-13 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.89E-8 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 22.724 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-13 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-14 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 80 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-9 | 80 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MRKRGTMIGT SKGRAPAYEK NGLRKGSWTE AEDVKLVTYI LRHGYGNWRA LPKQAGLLRC 60 GKSCRLRWVN YLRPDIKRGN FSKEEEDTII RLHQFLGNKW SDIASKLPGR TDNEIKNVWN 120 TRLKKRLISI LPPQSLTSSI TCNPTDNIEI NQYLGMKGDN SMQDALDQFS TAIMGDDVLD 180 RCVTETNEEE NNNLAPFQQP IDMSWDSNNV WWIQYLEREL DLVDSNNQQP TVSSQLPHLF 240 QGEDDLTSDN GGITSHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 23 | 127 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020690564.1 | 1e-62 | myb-related protein Zm1-like | ||||
TrEMBL | A0A0K9NXW9 | 0.0 | A0A0K9NXW9_ZOSMR; Myb domain protein 15 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-64 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Zosma50g00250.1 |