PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma50g00130.1
Common NameZOSMA_50G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 134aa    MW: 15109.9 Da    PI: 10.4131
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma50g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.7e-1563122155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++   + k+ ++++lg +  +++Aa a++ a+ k++g
  Zosma50g00130.1  63 SVYRGVTRHRWTGRYEAHLWDkNCWnlSQsKKgRQVYLGAYNDEKDAANAYDLAAIKYWG 122
                      78*******************999954337556**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1063122IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1763132IPR016177DNA-binding domain
CDDcd000188.84E-1763132No hitNo description
Gene3DG3DSA:3.30.730.103.1E-1664131IPR001471AP2/ERF domain
PROSITE profilePS5103219.08564130IPR001471AP2/ERF domain
SMARTSM003803.4E-2064133IPR001471AP2/ERF domain
PRINTSPR003673.6E-66576IPR001471AP2/ERF domain
PRINTSPR003673.6E-6112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEEMEKGKSG SDMYRSNAGS SSSGISSSGS SSETKKSGMS EEKKKKKKKR KIVARERPSE  60
RSSVYRGVTR HRWTGRYEAH LWDKNCWNLS QSKKGRQVYL GAYNDEKDAA NAYDLAAIKY  120
WGQDTLLNFP VNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14250KKKKKKKRK
24450KKKKKRK
34550KKKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022016792.18e-47AP2-like ethylene-responsive transcription factor At1g16060
SwissprotA0JPZ83e-35AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A0K9NXZ71e-91A0A0K9NXZ7_ZOSMR; Uncharacterized protein
STRINGGorai.009G008800.16e-46(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.12e-35AP2 family protein