PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g02160.1
Common NameZOSMA_4G02160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 357aa    MW: 39477.9 Da    PI: 8.5993
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g02160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.49.1e-3173176198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                     f+kv tpsdv+k++rlv+pk++ae++        +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  
  Zosma4g02160.1  73 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldaA-ANEKELLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEsG 166
                     89***************************963.4456679***********************************************95546656 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     + +l++ + r
  Zosma4g02160.1 167 RDRLFIDWKR 176
                     6666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-4264183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-2970179IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-2671158No hitNo description
PfamPF023624.8E-2873177IPR003340B3 DNA binding domain
SMARTSM010196.2E-2173178IPR003340B3 DNA binding domain
PROSITE profilePS5086314.39573178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDYSGGGAGE QEEDNSTRLR STFMLTPLTH LHPSPPQHPS SSSTSSSSPT TSNRDPAALL  60
MPSQQNVEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDAAANEKEL LLNFEDRNGK  120
PWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTVSFGR GVGESGRDRL FIDWKRRPES  180
HHHHNHNLQN PPTIPRFPIQ QQHPYNSMMP WSRLYTPSSA LGGPSMSGYN PYLYLRSPVS  240
SGPSSSSSSF AGHSNLGVQM QYPSAGNAPS TQMRTVLPIV YDSVPVRQYS ENVPPVTNSK  300
RVRLFGVNLD CSSSAAASSS SQVRSPVLSL QLCLGDGATN VADEEDKQTM SLDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-64681793115B3 domain-containing transcription factor NGA1
5os9_B3e-64681793115B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444697.17e-85B3 domain-containing protein Os03g0120900
RefseqXP_006444698.17e-85B3 domain-containing protein Os03g0120900
RefseqXP_006491400.17e-85B3 domain-containing protein Os03g0120900
RefseqXP_024948291.17e-85B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-80Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0K9P1340.0A0A0K9P134_ZOSMR; Auxin response factor 24
STRINGXP_006491400.13e-84(Citrus sinensis)
STRINGXP_006444696.13e-84(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-68B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]