PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g02000.1
Common NameZOSMA_4G02000
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 520aa    MW: 59173.7 Da    PI: 6.9905
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g02000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.11.3e-25205258155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+ Wt +LH++Fv+av+q+ G +k  Pk+il+lm+v+g+t+e+v+SHLQkYRl
  Zosma4g02000.1 205 KARVIWTVDLHQKFVDAVNQI-GFDKVGPKKILDLMNVPGITRENVASHLQKYRL 258
                     68*******************.9*******************************8 PP
2Response_reg81.62.5e-27221301109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  +++ale+l++k+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  Zosma4g02000.1  22 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARAALEMLRTKRgvFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 114
                     89*********************.******************99***********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  Zosma4g02000.1 115 ACDYLLKPVRMKELRN 130
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.9E-1421517IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.5E-4519162No hitNo description
SuperFamilySSF521728.11E-3619157IPR011006CheY-like superfamily
SMARTSM004482.3E-3220132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.12521136IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-2422131IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.25E-3023136No hitNo description
SuperFamilySSF466891.61E-18203262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-28204263IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-22205258IPR006447Myb domain, plants
PfamPF002494.5E-7210257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MMEAPSSCSS SRAEAFPAGL RVLVVDDDPT WLKILEKMLR KCSYEVTTCG LARAALEMLR  60
TKRGVFDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMKG VQHGACDYLL  120
KPVRMKELRN IWQHVFRKKI HEIKEVESHD NSSEEIQFLS NEFAERQQML YAGDLNSTLK  180
RKDMTENTDI FVDTDVFDHA SSVKKARVIW TVDLHQKFVD AVNQIGFDKV GPKKILDLMN  240
VPGITRENVA SHLQKYRLYL SRLQKQNYGV TIRGGTTAAT QTDTDGLKDT TNFVLQIQKA  300
VSHSSGKRRN HVDTVTKTEV SGDAALKHAA ISQLQKDSSI KVFGSTSTKT VIPNSQYQIQ  360
MQQQQQHDNH CWNLEGIAAI PFTNYSKHYS NSNQSDYHQH RQQMSTESKQ KHNVSDIKSN  420
HSFSKQINLI SVQVDHGLLG SKNYGIGVSD EFDQQQNYLF DNLDHPQLQK TVPSSSQYEY  480
LNNIDINSMD IHNYNNSTQI TQLQGDMQFD YEFMSMRRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16201263163ARR10-B
5lxu_A7e-17205260156Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797265.11e-146two-component response regulator ORR26-like isoform X1
TrEMBLA0A0K9P1180.0A0A0K9P118_ZOSMR; Two-component response regulator
STRINGXP_008797265.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-110response regulator 11