PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g01430.1
Common NameZOSMA_4G01430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HB-PHD
Protein Properties Length: 704aa    MW: 78972.8 Da    PI: 5.9968
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g01430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.51.5e-10556607657
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      ft++  + L e Fe n+yp++e++  L + lg+t +qV  WF   R ++++
  Zosma4g01430.1 556 YFTSSVYQKLLESFEDNQYPNKETKMSLVDGLGITYKQVEKWFERTRCQHRR 607
                     599999*****************************************99997 PP
2PHD38.23.3e-13210264150
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                     +C+ C +  s+ +++++lCdg C++ fH+kCl+++l +e++p g   wlC+ C +
  Zosma4g01430.1 210 ICAKCASklSTLNNDIILCDGvCDRGFHQKCLTPPLLNEDIPPGdeGWLCPGCVC 264
                     599999988888********77********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.21E-13201268IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.5E-12206265IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.674208265IPR019787Zinc finger, PHD-finger
SMARTSM002491.7E-9210263IPR001965Zinc finger, PHD-type
PfamPF006283.1E-10210264IPR019787Zinc finger, PHD-finger
CDDcd155044.73E-26211262No hitNo description
PROSITE patternPS013590211262IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.746548608IPR001356Homeobox domain
SMARTSM003894.4E-8551612IPR001356Homeobox domain
SuperFamilySSF466891.2E-10552609IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-11556611IPR009057Homeodomain-like
PfamPF000463.0E-8556607IPR001356Homeobox domain
CDDcd000862.97E-8557609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MENSPKINSL KTRKSPRFNN IEKKCQDIKC ESSKGKENAS KTPAKKALSV SKKNKRHEKL  60
KGKRYPLRSS LNGVRVLRSM SSSVSKSQSS APVSTIQSVN LVQKKRKKKK TVNKQAKDEY  120
SRIRVHVRYL LQKINYEQSL IDAYDTEGWK GLSMEKIRPE KELQRAKNEI LHCKFRIRGQ  180
FKQLMTLLSE GKLEDNLFDS QGQISSEDII CAKCASKLST LNNDIILCDG VCDRGFHQKC  240
LTPPLLNEDI PPGDEGWLCP GCVCKIDCID FINDLLGLDL SIEDAWEEIF PEAAVISAGD  300
TLFDDVGLPS EDSEDDDYAP EGLDGSGCLD VDHDSAEFSE ESFTSKDSVE ATDGLQSENF  360
GFPSDDSDDN DFDPSQPDLS MKSERDGSSS DESDFTSDTN DLKDEINEFN GDLSSKQNNS  420
ITSEQSNKEV FGRNCDKSSE NAEPFPSLNP DVSVLSSKRN QERLDYKKLY DETFSHSSSE  480
SDEDFFEDTN TGPIDNQINH RSTDIHKHAA KNSSKKNKLT MTHATAIVID QNLNDSKDSE  540
GIVSVGSKNS SSPSRYFTSS VYQKLLESFE DNQYPNKETK MSLVDGLGIT YKQVEKWFER  600
TRCQHRRLHA SKKTTLTTPP HSSSERSITT SPRTSLEIPL VKLSTAAPTC NTTLGNRFPS  660
ISISDNITPK KEVNFNVRPE AKASPINREE LVMRELRKRK RQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103107KKRKK
2103109KKRKKKK
3695702LRKRKRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYN40.0A0A0K9NYN4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-80Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain