PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma49g00720.1
Common NameZOSMA_49G00720
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 541aa    MW: 58360.5 Da    PI: 5.0614
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma49g00720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.63.5e-711445393374
             GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...........sseelaalklf 84 
                      ++L+++A+a++++d +la  +L+rl  + +sp+g p+qR+ +yf+eAL++ l   v+e  + ++ +++s  +            +++++alk f
  Zosma49g00720.1 144 DQLIRAAQAIEANDRNLACVILSRLTPHlNSPSGPPLQRASFYFKEALHSLLPL-VDEDENGFNNNNNSFVDdpfsvslstvdLVRKISALKSF 236
                      68***********************8666********************99854.222222222222221112333455556688999999*** PP

             GRAS  85 sevsPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRpeg.........ppslRiTgvgspesgskeeleetge 163
                      s++sP+++fs +taNq Il+++         + +HiiDfdi+ G+QW ++l+++a+R++          pps+ +T+++    +++ e + +++
  Zosma49g00720.1 237 SDLSPLPQFSSFTANQSILDSIVAGgdhgfsRPIHIIDFDIGVGGQWSSFLHEIATRSRAqrgvmvpvqPPSVIMTVIVV---EESLESSLMAD 327
                      ********************97544356667889***********************944445666666*********99...4689999**** PP

             GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqe...adh.nses 252
                      +L++fA  +g++++++++    +    l + r++ g+++aV++  ++ rll   + +   +   +L++v+++ Pkvvv+v+ e   ++   + s
  Zosma49g00720.1 328 NLRDFAVGVGIRLDIDFVRIGGMGPAALGAVRLSAGDNVAVSFTPAVVRLLGGGGGSGGdAVGGFLRFVRRVAPKVVVFVDTEpccVESgPDRS 421
                      *****************977788888888889999****************8776665558999*******************8654554567* PP

             GRAS 253 Flerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                      F + f+  l+yys++++sl++ ++      e+   +E++l++++i ++v   g +          Wr+ le+aGFk++p+se++++qa+ l r+
  Zosma49g00720.1 422 FRRSFVGGLDYYSVVLESLDSAVAVVGfgeEQVGRIEKALFRPKIWSAVRSWGVQ-------GLPWRDILERAGFKSIPFSEFTESQAEWLTRR 508
                      *******************9886554444388899***************99998.......779***************************** PP

             GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ++ g++v  ++gs++l W++r+L ++SaW+
  Zosma49g00720.1 509 APVGGFHVARRDGSITLSWQERELSATSAWK 539
                      ******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.781116519IPR005202Transcription factor GRAS
PfamPF035141.2E-68144539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKPSTATFTA PIPLPKISFS INSTNSSNST TNTYEHTSLL DQSTNSSPSS APPIADVNHN  60
VNNGNSISTD PFDDWDPLTF LLLDSSSDST TPTHQDTSLV NFSSPSAATF DMDSLFPPPP  120
PSHNHSHPAL FPFPSPIFEQ THLDQLIRAA QAIEANDRNL ACVILSRLTP HLNSPSGPPL  180
QRASFYFKEA LHSLLPLVDE DENGFNNNNN SFVDDPFSVS LSTVDLVRKI SALKSFSDLS  240
PLPQFSSFTA NQSILDSIVA GGDHGFSRPI HIIDFDIGVG GQWSSFLHEI ATRSRAQRGV  300
MVPVQPPSVI MTVIVVEESL ESSLMADNLR DFAVGVGIRL DIDFVRIGGM GPAALGAVRL  360
SAGDNVAVSF TPAVVRLLGG GGGSGGDAVG GFLRFVRRVA PKVVVFVDTE PCCVESGPDR  420
SFRRSFVGGL DYYSVVLESL DSAVAVVGFG EEQVGRIEKA LFRPKIWSAV RSWGVQGLPW  480
RDILERAGFK SIPFSEFTES QAEWLTRRAP VGGFHVARRD GSITLSWQER ELSATSAWKC  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2514853824377Protein SCARECROW
5b3h_D1e-2514853824377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NZ500.0A0A0K9NZ50_ZOSMR; GRAS family transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-64GRAS family protein