PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma49g00640.1
Common NameZOSMA_49G00640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 271aa    MW: 30975.6 Da    PI: 7.4999
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma49g00640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.7e-2988141255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr++Wt  L ++F++ave LGG+++AtPk++lelm+v +Ltl+hvkSHLQ+YR+
  Zosma49g00640.1  88 PRMKWTDSLRAHFIHAVELLGGHDRATPKAVLELMNVTDLTLAHVKSHLQMYRT 141
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1486142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2587143IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-2288142IPR006447Myb domain, plants
PfamPF002491.4E-689140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTDSGSGSSG YDAVGRNEGD GFVLHRREEE PSLRLGLDNV AEYPPMHYLY HHNYNYNYNN  60
RQHHQPQIYG RDFKRNSRSE RKKSGRGPRM KWTDSLRAHF IHAVELLGGH DRATPKAVLE  120
LMNVTDLTLA HVKSHLQMYR TMKSTERIPS SPSGHNLIQT NTDTMDLNQS AAALVMVRQR  180
QVEEEEQMTM MKTSVSLRPL TPPALPTKNS RLLDCNQWSI TDHQTSKLIK ADDGSMEGRS  240
FQWLNLNHPN LEFTLGRQSW EVVDQTESDC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-1489143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1489143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1489143357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1489143357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYT90.0A0A0K9NYT9_ZOSMR; Myb family transcription factor-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-39G2-like family protein