PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma49g00520.1 | ||||||||
Common Name | ZOSMA_49G00520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ZF-HD | ||||||||
Protein Properties | Length: 176aa MW: 19331.5 Da PI: 8.6137 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88 | 9.2e-28 | 3 | 56 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + +Y++C++NhAa+lG++a+DGCgE++p++++ + +++CaACgCHRnFHR+ ++e Zosma49g00520.1 3 RETYRDCMRNHAATLGTYATDGCGEYTPNPSS---TGGMQCAACGCHRNFHRKVPVE 56 679*************************9555...699***************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.0E-22 | 5 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.3E-22 | 5 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.182 | 6 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-15 | 6 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.82E-14 | 72 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-25 | 75 | 145 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-23 | 86 | 144 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MERETYRDCM RNHAATLGTY ATDGCGEYTP NPSSTGGMQC AACGCHRNFH RKVPVESSDA 60 NNLVVQLAHS PSSTAEGRTM SDGTRRRTRT KFSNEQKEKM LMFSEKIGWR IPRRDETVDR 120 VGMFCREIGI SRQIFKVWMH NHKNDNSSSS SAAAVAGGDA DGGDDVHKSK PNASV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-19 | 84 | 149 | 16 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263466.1 | 1e-53 | PREDICTED: zinc-finger homeodomain protein 1 | ||||
Swissprot | A2XLF4 | 1e-44 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 1e-44 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A0K9NZ30 | 1e-129 | A0A0K9NZ30_ZOSMR; Uncharacterized protein | ||||
STRING | VIT_17s0000g00810.t01 | 6e-53 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9204 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-38 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Zosma49g00520.1 |