PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma48g00610.1 | ||||||||
Common Name | ZOSMA_48G00610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HSF | ||||||||
Protein Properties | Length: 206aa MW: 23920.5 Da PI: 10.3302 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103 | 2.5e-32 | 13 | 104 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl k+y++++d++++++isw+++g++f++++++ f++++Lpk Fkh+n++SF+RQLn YgF+++ ++ eF+++sFk+g+k+ll+ Zosma48g00610.1 13 FLIKTYQLVDDPTNNDVISWNDDGSTFIIWQPSGFSRDLLPKLFKHNNLSSFIRQLNNYGFRRIIPKR---------LEFTNDSFKRGEKHLLS 97 99**************************************************************9999.........78*************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i+r+k+ Zosma48g00610.1 98 EIHRHKN 104 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.3E-46 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.67E-30 | 10 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-32 | 10 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.5E-28 | 13 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-18 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-18 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.0E-18 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MKMQFQIRKP TLFLIKTYQL VDDPTNNDVI SWNDDGSTFI IWQPSGFSRD LLPKLFKHNN 60 LSSFIRQLNN YGFRRIIPKR LEFTNDSFKR GEKHLLSEIH RHKNLPPFLL KNADIVAENH 120 MLREKNTYLN QKLSQMKNMG NNILMTTTNH AMPLDLMAIK STESTNKGTP LLLTLKVKEK 180 TGHEAKVLKQ QRVSEEQEQQ DSSPE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 9e-21 | 13 | 101 | 20 | 119 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790507.1 | 9e-55 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q6Z9C8 | 1e-51 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A0K9NZB7 | 1e-149 | A0A0K9NZB7_ZOSMR; Heat stress transcription factor B-2b | ||||
STRING | XP_008790507.1 | 3e-54 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 2e-45 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Zosma48g00610.1 |
Publications ? help Back to Top | |||
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