PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma48g00250.1 | ||||||||
Common Name | ZOSMA_48G00250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 473aa MW: 54489 Da PI: 5.9631 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156 | 1.6e-48 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +p Gf FhPtd el+++yLk+k g ++e+ evi+evdiyk+ePw+Lp k ++ +++ +w+fF + d+ky+tg+r+nrat++gyWk+tgkd+ v Zosma48g00250.1 15 MPLGFGFHPTDVELISHYLKRKFMGLNNEI-EVIPEVDIYKYEPWELPgKtRIVSRDCKWHFFNTLDRKYPTGSRSNRATEAGYWKSTGKDRVV 107 699************************999.99***************5346666777************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++++g+kktLvf++gr p+g++tdW+mhey l Zosma48g00250.1 108 RS-QNRAIGTKKTLVFHQGRPPRGKRTDWIMHEYFL 142 99.8999***************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-56 | 5 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.363 | 15 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-23 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MMSTTEMDVW DTSSMPLGFG FHPTDVELIS HYLKRKFMGL NNEIEVIPEV DIYKYEPWEL 60 PGKTRIVSRD CKWHFFNTLD RKYPTGSRSN RATEAGYWKS TGKDRVVRSQ NRAIGTKKTL 120 VFHQGRPPRG KRTDWIMHEY FLDENERKSS IAKDIFVLCR VTKRNSLEHE DGDVYNDAKK 180 TNDTCALSRV QKDTPNKIEE QVVEVSNAED ANCEAWVQEL YDPHFSEFLI PVSTCKVEID 240 EVNTNSLEPI SELENSLLPL KNAENVASAN EEYNRYSDFQ DCTMSLYEEL CYFAQLDQEE 300 ILDVQFRKTQ VPSIGEEYPI DKTIETGIHT RDGQTTNIDG NSNNWSKLQA HKMAQKNTEA 360 MSHTVILENS NCHLDVNEFS EHVINNKNAA YYDHGIPFNN KERVFEEPEN HDQTTRRFRD 420 SVKSLIRKAL KDAHVISRRH SHISKRSMLI NGLGGCLTGR IAVMTGLMQE KV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-47 | 2 | 166 | 4 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-47 | 2 | 166 | 4 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-47 | 2 | 166 | 4 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-47 | 2 | 166 | 4 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-47 | 2 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_B | 7e-47 | 2 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_C | 7e-47 | 2 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swm_D | 7e-47 | 2 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_A | 7e-47 | 2 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_B | 7e-47 | 2 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_C | 7e-47 | 2 | 166 | 7 | 170 | NAC domain-containing protein 19 |
3swp_D | 7e-47 | 2 | 166 | 7 | 170 | NAC domain-containing protein 19 |
4dul_A | 8e-47 | 2 | 166 | 4 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-47 | 2 | 166 | 4 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P1P0 | 0.0 | A0A0K9P1P0_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7560 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03200.1 | 2e-63 | NAC domain containing protein 45 |
Link Out ? help Back to Top | |
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Phytozome | Zosma48g00250.1 |