PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma48g00040.1
Common NameZOSMA_48G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family RAV
Protein Properties Length: 348aa    MW: 39087.1 Da    PI: 9.1055
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma48g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-123785155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++kGV   + +grW A+I++      ++r++lg+f  + eAa+a++ a+++++g
  Zosma48g00040.1 37 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEVEAARAYDVAAQRFRG 85
                     689***9788.8*********3.....5**********99*************98 PP
2B399.12.8e-31171274196
                      EEEE-..-HHHHTT-EE--HHH.HTT......---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k+ tpsdv+k++rlv+pk++ae+h      g +++  +++ l +ed  gr+W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ 
  Zosma48g00040.1 171 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqitGDVTAacKGILLNFEDVGGRVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVSFQRSI 264
                      89*************************9999844444568899************************************************987 PP

                      SSEE..EEEE CS
               B3  87 rsefelvvkv 96 
                      + +++l++ +
  Zosma48g00040.1 265 DPDGQLFIDW 274
                      7888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-83785IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-153792IPR016177DNA-binding domain
CDDcd000182.35E-243791No hitNo description
Gene3DG3DSA:3.30.730.102.0E-183892IPR001471AP2/ERF domain
SMARTSM003806.1E-273899IPR001471AP2/ERF domain
PROSITE profilePS5103218.6373893IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-39162276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-29168263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-29170272No hitNo description
SMARTSM010197.3E-22171278IPR003340B3 DNA binding domain
PROSITE profilePS5086313.747171278IPR003340B3 DNA binding domain
PfamPF023625.7E-28171274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEVMIGNHR RGSVDSVVLD SPESCSAEAE SRKLPSSRFK GVVPQPNGRW GAQIYEKHQR  60
VWLGTFNEEV EAARAYDVAA QRFRGRDAVT NCKLLSDSVD ADMTELLFLN THSKTEIVDM  120
LRKHTYQDEL QQSRRYHGSS VDRLTYGTTC TGINGFRNPL PSSSIQKESL FDKTVTPSDV  180
GKLNRLVIPK QHAEKHFPLQ ITGDVTAACK GILLNFEDVG GRVWRFRYSY WNSSQSYVLT  240
KGWSRFVKEK NLKAGDVVSF QRSIDPDGQL FIDWKPRFFV GAGIGSSNLC YMSFHPVQPV  300
KPVQKVRLFG VNIFKLPDSA GSAAGEIDST DASNGKRRRE MDLFPHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5316827711117DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117439.11e-140AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-120RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0K9P1K30.0A0A0K9P1K3_ZOSMR; Auxin response factor 17
STRINGXP_010262942.11e-139(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-122related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]