PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma48g00010.1 | ||||||||
Common Name | ZOSMA_48G00010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 411aa MW: 46446.3 Da PI: 9.9365 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.5e-14 | 4 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 r+rW +eEd ll+ +v q+G++ W++ +++mg +R +k+c +rw +yl Zosma48g00010.1 4 RQRWQPEEDALLLAYVSQHGPKEWSLLPQRMGlssFHRDPKSCLERWKNYL 54 89*********************************99************97 PP | |||||||
2 | Myb_DNA-binding | 33.3 | 1.1e-10 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l + + ++G++ W++Ia++++ gRt+k + +w + Zosma48g00010.1 60 KGSLSPEEQSLVISLQSKHGNK-WNLIASHLP-GRTPKRLGKWWEVF 104 57789*****************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.714 | 1 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-12 | 3 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.22E-22 | 4 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-19 | 6 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.10E-9 | 6 | 54 | No hit | No description |
Pfam | PF13921 | 1.9E-12 | 7 | 70 | No hit | No description |
SMART | SM00717 | 7.6E-10 | 59 | 107 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.599 | 59 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-16 | 62 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.29E-7 | 64 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010338 | Biological Process | leaf formation | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0000793 | Cellular Component | condensed chromosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MKDRQRWQPE EDALLLAYVS QHGPKEWSLL PQRMGLSSFH RDPKSCLERW KNYLRPGLKK 60 GSLSPEEQSL VISLQSKHGN KWNLIASHLP GRTPKRLGKW WEVFKEKQIK NNQKKKNQQH 120 QQQQQCCYSM GETGSNSNTG TTSVILRPQQ GEYDHILETF ADKYVVNKGK MLPDLSPSMS 180 SCNDSAPPHQ NLGGGTTLGV AAYSSYQNLL PRFAHQNIPP WMSTTTTIAV AGVSATGGCN 240 NSNSPSVTLS LSPGENGGGG GSGGKNHVGL LQVSTLTQLC RELDEARQSL MHHKKEANWR 300 LSRLEQQLES EKARKKREKE EEIKTKIIAL RKEEESCLDR LNTEYRDQLS AIQRDADDKE 360 AKMMEMWSSK HSKLTRLIGH FGSSDASLDH HHRRRHHHLP RSSPFQHQQQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-13 | 7 | 93 | 7 | 89 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-13 | 7 | 93 | 7 | 89 | C-Myb DNA-Binding Domain |
1msf_C | 5e-13 | 7 | 93 | 7 | 89 | C-Myb DNA-Binding Domain |
3zqc_A | 5e-13 | 11 | 116 | 9 | 110 | MYB3 |
3zqc_D | 5e-13 | 11 | 116 | 9 | 110 | MYB3 |
3zqc_G | 5e-13 | 11 | 116 | 9 | 110 | MYB3 |
3zqc_J | 5e-13 | 11 | 116 | 9 | 110 | MYB3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 313 | 318 | RKKREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075224.1 | 1e-114 | protein rough sheath 2 homolog | ||||
Refseq | XP_027178645.1 | 1e-114 | protein rough sheath 2 homolog | ||||
TrEMBL | A0A0K9P1H9 | 0.0 | A0A0K9P1H9_ZOSMR; Myb domain protein 94 | ||||
STRING | XP_006430817.1 | 1e-113 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 2e-70 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma48g00010.1 |