PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma47g00090.1 | ||||||||
Common Name | ZOSMA_47G00090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23889.2 Da PI: 5.3418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.3e-12 | 91 | 138 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn+ Er RR riN+++ L++l+P + K +Ka++L +eY+k+Lq Zosma47g00090.1 91 QVHNQKERERRGRINKKMKALQDLIPGC-----HKKDKASMLDDMTEYVKYLQ 138 57*************************9.....699****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.04 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 91 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-16 | 92 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-16 | 92 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-12 | 93 | 142 | No hit | No description |
SMART | SM00353 | 4.7E-12 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDYTGDVGGS NMAGLFIGED EMVSWLNYDP AAAESSTRTD FINTQPPVLV AEVEAIRPDI 60 ITHTRNRTSY LWFDDGYDNR RTIKSKLKAA QVHNQKERER RGRINKKMKA LQDLIPGCHK 120 KDKASMLDDM TEYVKYLQFL VKTMTMVEGW PVPLMMYNNE QLLVPPIEEA FSNKVDIMAG 180 ATAFMPQIAP DKMLDGQQNW QSDYSGHFI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P1Z2 | 1e-157 | A0A0K9P1Z2_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 8e-21 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Zosma47g00090.1 |