PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma467g00200.1
Common NameZOSMA_467G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 136aa    MW: 15330.4 Da    PI: 9.598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma467g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT eEd  l+++v   G gtW+++ar+ g++Rt+k+c++rw +yl
  Zosma467g00200.1 16 RGPWTIEEDAALINYVSDNGEGTWNSVARCSGLKRTGKSCRLRWMNYL 63
                      89********************************************97 PP
2Myb_DNA-binding46.21e-1469110144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                       rg+ T+eE++l++++  ++G++ W++Ia++++ gRt++++k++w
  Zosma467g00200.1  69 RGNITPEEQLLILELQCRWGNR-WSKIAQYLP-GRTDNEIKNYW 110
                       8999******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.0921167IPR017930Myb domain
SMARTSM007176.4E-131565IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-3116110IPR009057Homeodomain-like
PfamPF002498.1E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-231770IPR009057Homeodomain-like
CDDcd001674.11E-101863No hitNo description
SMARTSM007171.6E-968116IPR001005SANT/Myb domain
PROSITE profilePS5129413.61668121IPR017930Myb domain
PfamPF002492.5E-1369110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2071110IPR009057Homeodomain-like
CDDcd001671.72E-973110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTSAAQKIAD EVILGRGPWT IEEDAALINY VSDNGEGTWN SVARCSGLKR TGKSCRLRWM  60
NYLRPDIHRG NITPEEQLLI LELQCRWGNR WSKIAQYLPG RTDNEIKNYW GPERKCRNKL  120
GSSTAMSTAS NSRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251411025120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594838.11e-56transcription factor MYB78-like, partial
RefseqXP_028115735.11e-56transcription factor MYB108-like
SwissprotP813914e-55MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0K9P2E51e-94A0A0K9P2E5_ZOSMR; Uncharacterized protein
STRINGOB05G12230.12e-55(Oryza brachyantha)
STRINGGSMUA_Achr5P21090_0014e-56(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-57myb domain protein 62
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]