PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma462g00010.1
Common NameZOSMA_462G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 326aa    MW: 37107.6 Da    PI: 9.3079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma462g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1752.2e-54151411127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+++yLk+k+++++++  ++i++vd++++ePwdLp k+k +ekewyfF  rd+ky+tg r+nrat+sgyWk+tgkdke++
  Zosma462g00010.1  15 LPPGFRFHPTDEELIMYYLKNKISDSNFTG-RAIADVDLNRCEPWDLPGKAKMGEKEWYFFNLRDRKYPTGVRTNRATSSGYWKTTGKDKEIF 106
                       79*************************999.89***************99999**************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                       ++ + elvg+kktLvfykgrap+gekt+Wv+heyr
  Zosma462g00010.1 107 NTvSMELVGMKKTLVFYKGRAPRGEKTNWVIHEYR 141
                       9978889***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-619164IPR003441NAC domain
PROSITE profilePS5100559.53115164IPR003441NAC domain
PfamPF023651.4E-2716141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMDEERKKST STENLPPGFR FHPTDEELIM YYLKNKISDS NFTGRAIADV DLNRCEPWDL  60
PGKAKMGEKE WYFFNLRDRK YPTGVRTNRA TSSGYWKTTG KDKEIFNTVS MELVGMKKTL  120
VFYKGRAPRG EKTNWVIHEY RNSLSKFTFK PYKDEWVVCR VFKKNSVRKK YLSNSLDPSD  180
SHRSVVDRID TFMAPQMGNK NNNQGDSYCI NYMVNGTSMT TETRVLRGDS NPSQVTTTMT  240
NPNPLFQQTN FSGALNLNLG ATRAISQQFF AQPQSITMGH CGSILEYSSN NYGHGNDGDS  300
SNNNKIQAAA TMESCMALDS YWSTY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-531417016171NO APICAL MERISTEM PROTEIN
1ut4_B1e-531417016171NO APICAL MERISTEM PROTEIN
1ut7_A1e-531417016171NO APICAL MERISTEM PROTEIN
1ut7_B1e-531417016171NO APICAL MERISTEM PROTEIN
4dul_A1e-531417016171NAC domain-containing protein 19
4dul_B1e-531417016171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022731495.11e-105NAC domain-containing protein 100
TrEMBLA0A0K9P0C30.0A0A0K9P0C3_ZOSMR; NAC domain-containing protein 5
STRINGEOY291571e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.26e-91NAC domain containing protein 38