PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma45g00510.1
Common NameZOSMA_45G00510
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 313aa    MW: 32766 Da    PI: 9.4792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma45g00510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-064265225
                     -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                     k ++C  f+ t  C++G++C+F H
  Zosma45g00510.1 42 KSKPCTKFFSTSGCPFGETCHFLH 65
                     7789******************** PP
2zf-CCCH253.3e-08106130226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      kt+ C++f     Ck+G++C+FaHg
  Zosma45g00510.1 106 KTRMCKRFNTPEGCKFGEKCHFAHG 130
                      89**********************9 PP
3zf-CCCH35.12.3e-11279303126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+lC++f + G C +G+rC+FaHg
  Zosma45g00510.1 279 YKTKLCDNFTK-GSCTFGERCHFAHG 303
                      9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.514067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3994068IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-64165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-74265IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-54265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.41104131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-13105134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-8105134IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.92E-15174255IPR004088K Homology domain, type 1
SMARTSM003223.1E-12183253IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.1E-15183252IPR004088K Homology domain, type 1
PROSITE profilePS5008414.403184248IPR004088K Homology domain, type 1
PfamPF000132.8E-11186250IPR004088K Homology domain, type 1
CDDcd001059.81E-15186248No hitNo description
Gene3DG3DSA:4.10.1000.104.9E-16274307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-8278307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.671278305IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7278304IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9279303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESFAAERKR ARPDLVAASN GGVPTLKRFK ESESFQSGIG SKSKPCTKFF STSGCPFGET  60
CHFLHFVPGG INVVAQLNNM SSALPPSSRT NIQNPHGADG PVPGVKTRMC KRFNTPEGCK  120
FGEKCHFAHG DRELVRPFLP PHEDPRSFGG PMGGGGGRFA GRQQPFDPLS PTGGHPAAAS  180
FGASATAKIS VDASLAGGII GKGGVNSKQI CRATGAKLSI RDHESDPNLR NIELEGSFDQ  240
IKQASAMVRE LIVNISSSAP PAPTGMPGSG GPRVPGNNYK TKLCDNFTKG SCTFGERCHF  300
AHGADELVKS GV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805967.11e-135PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-109C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9P0K00.0A0A0K9P0K0_ZOSMR; Zinc finger CCCH domain-containing protein
STRINGXP_008782861.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-53C3H family protein