PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma452g00110.1
Common NameZOSMA_452G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 302aa    MW: 33101.1 Da    PI: 4.4327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma452g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18103154156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       s+ +GVr+++ +g+W+AeIrd s+   r  r +lg+f+t+eeAa a+ +a+++le e
  Zosma452g00110.1 103 SKTRGVRRRS-WGKWAAEIRD-SI---RgVRKWLGTFDTEEEAAMAYNEAALELEAE 154
                       6779***887.**********.23...34*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-17103152IPR016177DNA-binding domain
CDDcd000185.51E-24103151No hitNo description
SMARTSM003807.8E-21104167IPR001471AP2/ERF domain
PROSITE profilePS5103220.02104163IPR001471AP2/ERF domain
PfamPF008472.1E-12104154IPR001471AP2/ERF domain
PRINTSPR003671.7E-8105116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-21106156IPR001471AP2/ERF domain
PRINTSPR003671.7E-8127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAFLSKKIPP QPPAFRPARK IRIVCDDPDA TDSSSDEEYS HCRYMKKKQM VVEIRMPSEV  60
LGFPSDSSSQ DSSVPTGNPL FPVKTLKKKG FSKTSRISVN RSSKTRGVRR RSWGKWAAEI  120
RDSIRGVRKW LGTFDTEEEA AMAYNEAALE LEAEKKALAD SFSSTVSINS DVKKQQTSSV  180
SISTTTTSSS PPSIIDVVKN NNNNLVPIPA PLTAGEDDSL SLIPFDDDIT PGFFPASMNV  240
DFGLDLDGLV SDDQFGQMLD DAYESMADLP VFDMPNDTSE LPTGGEIPMD FDFDPIALMN  300
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-141021721281Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P0J40.0A0A0K9P0J4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-16ERF family protein