PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma44g00160.1 | ||||||||
Common Name | ZOSMA_44G00160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25316.5 Da PI: 8.7743 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.3e-16 | 45 | 90 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g W + Ed +l+ +v+q+G+ +W++Ia+ + gR++k+c++rw++ Zosma44g00160.1 45 KGHWKEAEDAKLKFLVAQHGPQNWSLIAEQLE-GRSGKSCRLRWYNQ 90 789*****************************.************96 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.6e-17 | 98 | 141 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eE+e+l+ a + +G++ W+ Ia+ ++ gRt++ +k++w+ Zosma44g00160.1 98 SSFSAEEEERLISARAIHGNK-WAMIAKLIP-GRTDNAVKNHWHVM 141 689******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.432 | 40 | 91 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-13 | 44 | 93 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.83E-27 | 45 | 138 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 46 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 7.7E-16 | 48 | 108 | No hit | No description |
CDD | cd00167 | 2.63E-12 | 48 | 89 | No hit | No description |
PROSITE profile | PS51294 | 23.611 | 92 | 146 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-14 | 96 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-20 | 99 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.68E-11 | 99 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MEFDQTTVTS ELAYQLTPPP LLLGRLPTSS RVMDVEEQSS RVGTKGHWKE AEDAKLKFLV 60 AQHGPQNWSL IAEQLEGRSG KSCRLRWYNQ LDPRINKSSF SAEEEERLIS ARAIHGNKWA 120 MIAKLIPGRT DNAVKNHWHV MKARNRREKQ ANNAYTSYIT RPSFPLSFYH HPSFYRGYGE 180 NKYAGVDPLS EAPSCCSSSS EHSDVDTKIL NVPFFDFLGV GNI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 44 | 139 | 6 | 101 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597681.1 | 1e-56 | transcription factor MYB56-like | ||||
Refseq | XP_020698982.1 | 6e-57 | transcription factor CSA-like | ||||
TrEMBL | A0A0K9P329 | 1e-168 | A0A0K9P329_ZOSMR; Uncharacterized protein | ||||
STRING | cassava4.1_028014m | 8e-55 | (Manihot esculenta) | ||||
STRING | cassava4.1_029396m | 6e-55 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-54 | myb domain protein 105 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma44g00160.1 |