PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma445g00050.1
Common NameZOSMA_445G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 221aa    MW: 25568.7 Da    PI: 5.1617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma445g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  Zosma445g00050.1 14 KGPWTEEEDRILISYINKYGYANWRALPKQAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding50.54.7e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++++E+e +++++++lG++ W++Ia++++ gRt++++k+ w++ 
  Zosma445g00050.1  67 RGNFSQQEEETIIRLHQMLGNK-WSAIAAKLP-GRTDNEIKNVWHTN 111
                       89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.238961IPR017930Myb domain
SMARTSM007174.3E-131363IPR001005SANT/Myb domain
SuperFamilySSF466896.88E-3013108IPR009057Homeodomain-like
PfamPF002493.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-251568IPR009057Homeodomain-like
CDDcd001671.96E-101661No hitNo description
PROSITE profilePS5129423.52762116IPR017930Myb domain
SMARTSM007171.5E-1366114IPR001005SANT/Myb domain
PfamPF002497.1E-1567111IPR001005SANT/Myb domain
CDDcd001673.20E-869110No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVRAPCCEKL VLKKGPWTEE EDRILISYIN KYGYANWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SQQEEETIIR LHQMLGNKWS AIAAKLPGRT DNEIKNVWHT NLKKRLNNNN  120
NSPNIPPPPS SKSPSKPPDD HIPQTSTGSE LDESFWSETL LPSLEDFDFN FNFDFDFEAP  180
MEEDQVVKYS IDHEDAQCYD HEMDWFQNID VGDLPTTVHI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020250172.19e-75myb-related protein Myb4-like
RefseqXP_022930976.11e-74transcription factor MYB14-like
RefseqXP_022930977.11e-74transcription factor MYB14-like
SwissprotQ9LTC42e-69MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A0K9P3I51e-164A0A0K9P3I5_ZOSMR; Myb-related protein Myb4
STRINGGLYMA20G35180.12e-72(Glycine max)
STRINGPGSC0003DMT4000601689e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-69myb domain protein 15
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]