PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma442g00020.1 | ||||||||
Common Name | ZOSMA_442G00020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HB-other | ||||||||
Protein Properties | Length: 158aa MW: 18683.3 Da PI: 8.9633 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.1 | 2.3e-16 | 42 | 107 | 1 | 57 |
TT--SS--HHHHHHHHHH.........HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeel.........FeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+ ++++++q++ Le++ F+++ p+a++r L kkl+++ +qVk+WFqNrR+k+k+ Zosma442g00020.1 42 KRNYHRYNHDQIQNLEAYvgdlkphlmFKECTCPDANQRIILGKKLNMDSQQVKYWFQNRRMKMKN 107 67888999999999998555555555599***********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.91E-16 | 27 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 37 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.216 | 39 | 108 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-9 | 41 | 112 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.2E-14 | 42 | 107 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.09E-11 | 42 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MYSGSRLDDF DGQGHRLSRE VDTNVDQNSV VQYESMSCNE KKRNYHRYNH DQIQNLEAYV 60 GDLKPHLMFK ECTCPDANQR IILGKKLNMD SQQVKYWFQN RRMKMKNQLK NKENSVLKQQ 120 IDKLRHEKAL LIMEAMSKPC CAQCGYHPVY EKIYQKD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P3J6 | 1e-114 | A0A0K9P3J6_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 5e-31 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma442g00020.1 |