PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma41g01120.1
Common NameZOSMA_41G01120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 383aa    MW: 43242.9 Da    PI: 6.3614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma41g01120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEd++l+d ++++G+g +W + +++ g++R++k+c++rw++yl
  Zosma41g01120.1 14 RGPWCPEEDQKLKDFIEKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding21.84.2e-07831042446
                      HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  24 WktIartmgkgRtlkqcksrwqk 46 
                      W+ Ia+ ++ gRt++++k++w++
  Zosma41g01120.1  83 WSIIAQNLQ-GRTDNDIKNYWNT 104
                      *********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.492966IPR017930Myb domain
SMARTSM007177.3E-111364IPR001005SANT/Myb domain
SuperFamilySSF466891.46E-2114107IPR009057Homeodomain-like
PfamPF002492.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-221569IPR009057Homeodomain-like
CDDcd001671.79E-81662No hitNo description
SMARTSM007170.06167108IPR001005SANT/Myb domain
PROSITE profilePS512948.6667110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-1470110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWCPE EDQKLKDFIE KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDAEDRTIC SLWSIIAQNL QGRTDNDIKN YWNTKLKKKM LGISTSQRKQ  120
NISQHHFHQH PIFQQEPHHQ FQQQLFPTFQ NTNIFAPSSS SLPFQIPSNS LLPNQIPAAE  180
TFSISHMDVL NSVSGINTTS TLFQDTRLTH NQQQQQNEQQ HQYPMKHEFG GEAADSTQKN  240
DFESNGVATE GNDLWKTIGF ESLLSINGLD EDKKYLLSTD LESSDVPLLE TGGSLNHHES  300
DRNNNIDIPS TWSVEESPLV SYSDFDEIKR LITSTSSSIH GCNNIFLDED PSGISISKPK  360
VEEGGGGEQG HRSRETPMYN YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-19141107108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P2R90.0A0A0K9P2R9_ZOSMR; Myb domain protein 68
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.19e-66MYB family protein